miRNA display CGI


Results 21 - 40 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12836 3' -52.4 NC_003387.1 + 19478 0.67 0.780915
Target:  5'- cGCC-GAGGCc---ACCgCGGGCGACGUg -3'
miRNA:   3'- -UGGcCUCUGuaauUGG-GUCCGUUGCG- -5'
12836 3' -52.4 NC_003387.1 + 22973 0.68 0.760217
Target:  5'- cCCGGu--CAUcGugUCGGGCGGCGCc -3'
miRNA:   3'- uGGCCucuGUAaUugGGUCCGUUGCG- -5'
12836 3' -52.4 NC_003387.1 + 2699 0.7 0.639162
Target:  5'- cUCGGcGAgGUUGugCUcGGCGACGCg -3'
miRNA:   3'- uGGCCuCUgUAAUugGGuCCGUUGCG- -5'
12836 3' -52.4 NC_003387.1 + 16098 0.74 0.386443
Target:  5'- gGCCGGAuuaucGACccgaUAACCaAGGCAACGCu -3'
miRNA:   3'- -UGGCCU-----CUGua--AUUGGgUCCGUUGCG- -5'
12836 3' -52.4 NC_003387.1 + 38604 0.66 0.838755
Target:  5'- uGCCGGuGAUcgaggcgcuGUUcGGCCCgcAGGCcGCGCu -3'
miRNA:   3'- -UGGCCuCUG---------UAA-UUGGG--UCCGuUGCG- -5'
12836 3' -52.4 NC_003387.1 + 7310 0.66 0.820276
Target:  5'- cGCCGGGGcCGU--ACCUgucGGCuGCGCu -3'
miRNA:   3'- -UGGCCUCuGUAauUGGGu--CCGuUGCG- -5'
12836 3' -52.4 NC_003387.1 + 50989 0.68 0.728168
Target:  5'- gGCCGGGGGCGUuuucguuugcUGugCaCGcGGCAugcACGCa -3'
miRNA:   3'- -UGGCCUCUGUA----------AUugG-GU-CCGU---UGCG- -5'
12836 3' -52.4 NC_003387.1 + 29310 0.75 0.377329
Target:  5'- gACCGcGGGCAcgAGCgCCAGGCcGCGCu -3'
miRNA:   3'- -UGGCcUCUGUaaUUG-GGUCCGuUGCG- -5'
12836 3' -52.4 NC_003387.1 + 44711 0.67 0.814566
Target:  5'- gUCGGuGACGUUcguuaugccucgcccGGCCgGGGCGccgaaGCGCa -3'
miRNA:   3'- uGGCCuCUGUAA---------------UUGGgUCCGU-----UGCG- -5'
12836 3' -52.4 NC_003387.1 + 21563 0.75 0.35954
Target:  5'- gUCGuGcAGACcgUGGCCCAGGC-GCGCg -3'
miRNA:   3'- uGGC-C-UCUGuaAUUGGGUCCGuUGCG- -5'
12836 3' -52.4 NC_003387.1 + 48399 0.68 0.738968
Target:  5'- gGCCGGGcGCA---GCCUGGGCAAC-Ca -3'
miRNA:   3'- -UGGCCUcUGUaauUGGGUCCGUUGcG- -5'
12836 3' -52.4 NC_003387.1 + 83 0.67 0.800966
Target:  5'- cACCaGGAGGCAgacacaugGACCCcGaGCugauGCGCg -3'
miRNA:   3'- -UGG-CCUCUGUaa------UUGGGuC-CGu---UGCG- -5'
12836 3' -52.4 NC_003387.1 + 45335 0.69 0.706278
Target:  5'- gGCCGcGGccGAucCGUgcaGCUCAGGCGACGCg -3'
miRNA:   3'- -UGGC-CU--CU--GUAau-UGGGUCCGUUGCG- -5'
12836 3' -52.4 NC_003387.1 + 22523 0.69 0.694103
Target:  5'- cGCCGc-GACccUGGCCCAGGCcgagggcuggcucGACGCg -3'
miRNA:   3'- -UGGCcuCUGuaAUUGGGUCCG-------------UUGCG- -5'
12836 3' -52.4 NC_003387.1 + 15306 0.72 0.516932
Target:  5'- cACCGGcGACAUUGugCUgcgcGGCGACGa -3'
miRNA:   3'- -UGGCCuCUGUAAUugGGu---CCGUUGCg -5'
12836 3' -52.4 NC_003387.1 + 16859 0.74 0.3957
Target:  5'- cGCgaGGAGAUGgcgccgcacGCCCAGGCGAUGCa -3'
miRNA:   3'- -UGg-CCUCUGUaau------UGGGUCCGUUGCG- -5'
12836 3' -52.4 NC_003387.1 + 15062 0.66 0.847658
Target:  5'- uACCGGAuGGCGUggucgUGAC---GGCGACGCu -3'
miRNA:   3'- -UGGCCU-CUGUA-----AUUGgguCCGUUGCG- -5'
12836 3' -52.4 NC_003387.1 + 41037 0.66 0.838755
Target:  5'- -aCGGcGACAUUGacACCCAcGCGAuCGCc -3'
miRNA:   3'- ugGCCuCUGUAAU--UGGGUcCGUU-GCG- -5'
12836 3' -52.4 NC_003387.1 + 309 0.66 0.829625
Target:  5'- aGCCGGuGGagcccgAGCCC-GGCGacACGCa -3'
miRNA:   3'- -UGGCCuCUguaa--UUGGGuCCGU--UGCG- -5'
12836 3' -52.4 NC_003387.1 + 49636 0.66 0.820276
Target:  5'- aGCCGGucGGCGagcUUGGCCCcgaguGGGuCGACGUc -3'
miRNA:   3'- -UGGCCu-CUGU---AAUUGGG-----UCC-GUUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.