miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12836 3' -52.4 NC_003387.1 + 22347 0.78 0.232505
Target:  5'- cGCCGGuGGgGcUGGCCCAGGCGcacccgGCGCa -3'
miRNA:   3'- -UGGCCuCUgUaAUUGGGUCCGU------UGCG- -5'
12836 3' -52.4 NC_003387.1 + 50989 0.68 0.728168
Target:  5'- gGCCGGGGGCGUuuucguuugcUGugCaCGcGGCAugcACGCa -3'
miRNA:   3'- -UGGCCUCUGUA----------AUugG-GU-CCGU---UGCG- -5'
12836 3' -52.4 NC_003387.1 + 22973 0.68 0.760217
Target:  5'- cCCGGu--CAUcGugUCGGGCGGCGCc -3'
miRNA:   3'- uGGCCucuGUAaUugGGUCCGUUGCG- -5'
12836 3' -52.4 NC_003387.1 + 18692 0.66 0.864743
Target:  5'- cACCGGGGugGggcgccguGCCgAGGCAGuaugacaGCa -3'
miRNA:   3'- -UGGCCUCugUaau-----UGGgUCCGUUg------CG- -5'
12836 3' -52.4 NC_003387.1 + 16859 0.74 0.3957
Target:  5'- cGCgaGGAGAUGgcgccgcacGCCCAGGCGAUGCa -3'
miRNA:   3'- -UGg-CCUCUGUaau------UGGGUCCGUUGCG- -5'
12836 3' -52.4 NC_003387.1 + 23692 0.73 0.47049
Target:  5'- gGCCGGAuACAacgcgagcaacGCCCAGGCGGCGa -3'
miRNA:   3'- -UGGCCUcUGUaau--------UGGGUCCGUUGCg -5'
12836 3' -52.4 NC_003387.1 + 15306 0.72 0.516932
Target:  5'- cACCGGcGACAUUGugCUgcgcGGCGACGa -3'
miRNA:   3'- -UGGCCuCUGUAAUugGGu---CCGUUGCg -5'
12836 3' -52.4 NC_003387.1 + 1739 0.7 0.627887
Target:  5'- cCCGGugcugaucGACAgcaugAGCCCGgcGGCGGCGCu -3'
miRNA:   3'- uGGCCu-------CUGUaa---UUGGGU--CCGUUGCG- -5'
12836 3' -52.4 NC_003387.1 + 22523 0.69 0.694103
Target:  5'- cGCCGc-GACccUGGCCCAGGCcgagggcuggcucGACGCg -3'
miRNA:   3'- -UGGCcuCUGuaAUUGGGUCCG-------------UUGCG- -5'
12836 3' -52.4 NC_003387.1 + 48204 0.68 0.728168
Target:  5'- cACCGGcGGCGgcGGCCgAGGUGAccCGCa -3'
miRNA:   3'- -UGGCCuCUGUaaUUGGgUCCGUU--GCG- -5'
12836 3' -52.4 NC_003387.1 + 29587 0.69 0.706278
Target:  5'- gGCCGaGGGGCcg-GAgCCGGGCGACu- -3'
miRNA:   3'- -UGGC-CUCUGuaaUUgGGUCCGUUGcg -5'
12836 3' -52.4 NC_003387.1 + 2699 0.7 0.639162
Target:  5'- cUCGGcGAgGUUGugCUcGGCGACGCg -3'
miRNA:   3'- uGGCCuCUgUAAUugGGuCCGUUGCG- -5'
12836 3' -52.4 NC_003387.1 + 21563 0.75 0.35954
Target:  5'- gUCGuGcAGACcgUGGCCCAGGC-GCGCg -3'
miRNA:   3'- uGGC-C-UCUGuaAUUGGGUCCGuUGCG- -5'
12836 3' -52.4 NC_003387.1 + 45335 0.69 0.706278
Target:  5'- gGCCGcGGccGAucCGUgcaGCUCAGGCGACGCg -3'
miRNA:   3'- -UGGC-CU--CU--GUAau-UGGGUCCGUUGCG- -5'
12836 3' -52.4 NC_003387.1 + 29310 0.75 0.377329
Target:  5'- gACCGcGGGCAcgAGCgCCAGGCcGCGCu -3'
miRNA:   3'- -UGGCcUCUGUaaUUG-GGUCCGuUGCG- -5'
12836 3' -52.4 NC_003387.1 + 48825 0.7 0.627887
Target:  5'- cGCCGGu--CGUgcuGCUCGGcGCGACGCa -3'
miRNA:   3'- -UGGCCucuGUAau-UGGGUC-CGUUGCG- -5'
12836 3' -52.4 NC_003387.1 + 5927 0.68 0.728168
Target:  5'- cGCCGGGGGC--UGACaaCAGGUuuccGCGCg -3'
miRNA:   3'- -UGGCCUCUGuaAUUGg-GUCCGu---UGCG- -5'
12836 3' -52.4 NC_003387.1 + 48399 0.68 0.738968
Target:  5'- gGCCGGGcGCA---GCCUGGGCAAC-Ca -3'
miRNA:   3'- -UGGCCUcUGUaauUGGGUCCGUUGcG- -5'
12836 3' -52.4 NC_003387.1 + 16098 0.74 0.386443
Target:  5'- gGCCGGAuuaucGACccgaUAACCaAGGCAACGCu -3'
miRNA:   3'- -UGGCCU-----CUGua--AUUGGgUCCGUUGCG- -5'
12836 3' -52.4 NC_003387.1 + 13703 0.73 0.474627
Target:  5'- uCCcGAGcGCG---GCCCAGGCGGCGCa -3'
miRNA:   3'- uGGcCUC-UGUaauUGGGUCCGUUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.