miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12836 3' -52.4 NC_003387.1 + 10208 0.68 0.749655
Target:  5'- gGCCGcGuGAuCGgucGCCCAGGCgAAUGCg -3'
miRNA:   3'- -UGGC-CuCU-GUaauUGGGUCCG-UUGCG- -5'
12836 3' -52.4 NC_003387.1 + 52562 0.67 0.800966
Target:  5'- uGCCGucGGCcagcaGGCCCAgcucGGCGGCGCg -3'
miRNA:   3'- -UGGCcuCUGuaa--UUGGGU----CCGUUGCG- -5'
12836 3' -52.4 NC_003387.1 + 3183 0.67 0.780915
Target:  5'- aAUCGGGGugAgccuGCUCGGGCugcGACGUc -3'
miRNA:   3'- -UGGCCUCugUaau-UGGGUCCG---UUGCG- -5'
12836 3' -52.4 NC_003387.1 + 4905 0.67 0.780915
Target:  5'- uGCCGGGuGCggUAgcugcacuGCCCGGcGCGGCGUc -3'
miRNA:   3'- -UGGCCUcUGuaAU--------UGGGUC-CGUUGCG- -5'
12836 3' -52.4 NC_003387.1 + 39171 0.67 0.777849
Target:  5'- gAUCGGGcugcccaggcccuuGaACAgcgAGCCCAGGCcGACGCu -3'
miRNA:   3'- -UGGCCU--------------C-UGUaa-UUGGGUCCG-UUGCG- -5'
12836 3' -52.4 NC_003387.1 + 43182 0.67 0.770641
Target:  5'- cCCGGcGGCGgcuuGCgCAGGCAcCGCu -3'
miRNA:   3'- uGGCCuCUGUaau-UGgGUCCGUuGCG- -5'
12836 3' -52.4 NC_003387.1 + 15976 0.67 0.770641
Target:  5'- -aCGGuGAC----GCCCAGGCGcuCGCa -3'
miRNA:   3'- ugGCCuCUGuaauUGGGUCCGUu-GCG- -5'
12836 3' -52.4 NC_003387.1 + 6917 0.68 0.753896
Target:  5'- aGCCGcGGGACAUUGucggccaucaucgcgGCCUgcgcagcggcGGGCAgGCGCc -3'
miRNA:   3'- -UGGC-CUCUGUAAU---------------UGGG----------UCCGU-UGCG- -5'
12836 3' -52.4 NC_003387.1 + 48808 0.68 0.749655
Target:  5'- cACCGG--GCGUUAgcACCCAGGCGGu-- -3'
miRNA:   3'- -UGGCCucUGUAAU--UGGGUCCGUUgcg -5'
12836 3' -52.4 NC_003387.1 + 985 0.67 0.800966
Target:  5'- cGCCGccGAGGCGccGACCgGGGUcgGAUGCg -3'
miRNA:   3'- -UGGC--CUCUGUaaUUGGgUCCG--UUGCG- -5'
12836 3' -52.4 NC_003387.1 + 27261 0.67 0.810719
Target:  5'- cGCCGcauGAGcCGc-GACgCGGGCAGCGCg -3'
miRNA:   3'- -UGGC---CUCuGUaaUUGgGUCCGUUGCG- -5'
12836 3' -52.4 NC_003387.1 + 43840 0.67 0.810719
Target:  5'- -aUGGcGGCGUUcACCuCGGGCGACaGCa -3'
miRNA:   3'- ugGCCuCUGUAAuUGG-GUCCGUUG-CG- -5'
12836 3' -52.4 NC_003387.1 + 26843 0.66 0.856324
Target:  5'- cGCCGGGGAgCAccaGGCCgCucGGCAACuGCa -3'
miRNA:   3'- -UGGCCUCU-GUaa-UUGG-Gu-CCGUUG-CG- -5'
12836 3' -52.4 NC_003387.1 + 15154 0.66 0.856324
Target:  5'- gACCGGGcagcGugAUgagcAGCCCGucGGCGACGa -3'
miRNA:   3'- -UGGCCU----CugUAa---UUGGGU--CCGUUGCg -5'
12836 3' -52.4 NC_003387.1 + 25789 0.66 0.847658
Target:  5'- gACCGccGACAgggccAGCCCGGcgaacaggaacaGCAGCGCg -3'
miRNA:   3'- -UGGCcuCUGUaa---UUGGGUC------------CGUUGCG- -5'
12836 3' -52.4 NC_003387.1 + 26486 0.66 0.847658
Target:  5'- aGCaCGGcGAUc---GCCgGGGCGACGCu -3'
miRNA:   3'- -UG-GCCuCUGuaauUGGgUCCGUUGCG- -5'
12836 3' -52.4 NC_003387.1 + 44903 0.66 0.844125
Target:  5'- cGCCGGgcaccucggccgccAGGCGUUGcagcucggccugcACCuCGGGCAGCuuGCg -3'
miRNA:   3'- -UGGCC--------------UCUGUAAU-------------UGG-GUCCGUUG--CG- -5'
12836 3' -52.4 NC_003387.1 + 12497 0.66 0.83513
Target:  5'- -gCGGGGGCugccgucguCCCAGGuCAGCGg -3'
miRNA:   3'- ugGCCUCUGuaauu----GGGUCC-GUUGCg -5'
12836 3' -52.4 NC_003387.1 + 52008 0.66 0.820276
Target:  5'- gGCCGucGACAcgAugCCuuGCGGCGCa -3'
miRNA:   3'- -UGGCcuCUGUaaUugGGucCGUUGCG- -5'
12836 3' -52.4 NC_003387.1 + 25556 0.66 0.820276
Target:  5'- cGCCGaGGGGCAgcAGCUUc-GCGACGCg -3'
miRNA:   3'- -UGGC-CUCUGUaaUUGGGucCGUUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.