Results 1 - 20 of 80 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12843 | 3' | -53.5 | NC_003387.1 | + | 22971 | 0.68 | 0.637195 |
Target: 5'- gUCAuGC-CGUCGgcGUCcagcUCGCCCGCg -3' miRNA: 3'- aAGU-CGaGCAGCuuUAGc---AGCGGGUG- -5' |
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12843 | 3' | -53.5 | NC_003387.1 | + | 51418 | 0.67 | 0.715412 |
Target: 5'- -----gUCGUCGA---CGUCGCCCGCc -3' miRNA: 3'- aagucgAGCAGCUuuaGCAGCGGGUG- -5' |
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12843 | 3' | -53.5 | NC_003387.1 | + | 46967 | 0.67 | 0.715412 |
Target: 5'- aUCAGCUCGUCGGccGAggCGUUcaGCUCGu -3' miRNA: 3'- aAGUCGAGCAGCU--UUa-GCAG--CGGGUg -5' |
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12843 | 3' | -53.5 | NC_003387.1 | + | 3614 | 0.67 | 0.715412 |
Target: 5'- -aCAGCgggugcgCGUCGAGGugcucgacuUCGUaCGCCUGCg -3' miRNA: 3'- aaGUCGa------GCAGCUUU---------AGCA-GCGGGUG- -5' |
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12843 | 3' | -53.5 | NC_003387.1 | + | 20558 | 0.67 | 0.704401 |
Target: 5'- gUCAGCUCGUC--AAUCugUGCCUGCa -3' miRNA: 3'- aAGUCGAGCAGcuUUAGcaGCGGGUG- -5' |
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12843 | 3' | -53.5 | NC_003387.1 | + | 44677 | 0.67 | 0.693316 |
Target: 5'- -cCAGCUCGUCGAGcagauaggcUCGcgCGgCCACc -3' miRNA: 3'- aaGUCGAGCAGCUUu--------AGCa-GCgGGUG- -5' |
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12843 | 3' | -53.5 | NC_003387.1 | + | 39744 | 0.68 | 0.682169 |
Target: 5'- --aAGCUCGUCGucGGUgGcCGCCCGg -3' miRNA: 3'- aagUCGAGCAGCu-UUAgCaGCGGGUg -5' |
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12843 | 3' | -53.5 | NC_003387.1 | + | 6634 | 0.68 | 0.659736 |
Target: 5'- gUCGGCggcCGUCuuGGGcucGUCGUCGaCCCGCu -3' miRNA: 3'- aAGUCGa--GCAG--CUU---UAGCAGC-GGGUG- -5' |
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12843 | 3' | -53.5 | NC_003387.1 | + | 29339 | 0.68 | 0.647346 |
Target: 5'- gUUCAGCUCGUCGGcgacccgAAUCaGcUCGgCCAUc -3' miRNA: 3'- -AAGUCGAGCAGCU-------UUAG-C-AGCgGGUG- -5' |
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12843 | 3' | -53.5 | NC_003387.1 | + | 24279 | 0.67 | 0.725248 |
Target: 5'- -cCAGCUCGUCGA--UCGUguacaccaugagcCGCCgCAg -3' miRNA: 3'- aaGUCGAGCAGCUuuAGCA-------------GCGG-GUg -5' |
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12843 | 3' | -53.5 | NC_003387.1 | + | 2275 | 0.67 | 0.726336 |
Target: 5'- gUCGGCUCGaCGucGUCcUCGCUgGCg -3' miRNA: 3'- aAGUCGAGCaGCuuUAGcAGCGGgUG- -5' |
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12843 | 3' | -53.5 | NC_003387.1 | + | 44380 | 0.67 | 0.726336 |
Target: 5'- -aCAGCggcaCGUCGggGUCGUCgagGUCgGCc -3' miRNA: 3'- aaGUCGa---GCAGCuuUAGCAG---CGGgUG- -5' |
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12843 | 3' | -53.5 | NC_003387.1 | + | 50428 | 0.66 | 0.789378 |
Target: 5'- -cCAGUUCcUUGAcuUCGUCGCUgGCg -3' miRNA: 3'- aaGUCGAGcAGCUuuAGCAGCGGgUG- -5' |
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12843 | 3' | -53.5 | NC_003387.1 | + | 34206 | 0.66 | 0.789378 |
Target: 5'- -aCAGCgccaCGUCGcgGUCGgUGCCCGg -3' miRNA: 3'- aaGUCGa---GCAGCuuUAGCaGCGGGUg -5' |
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12843 | 3' | -53.5 | NC_003387.1 | + | 23042 | 0.66 | 0.779231 |
Target: 5'- cUCGGCcaCGUCGAcGUCGaCGUCgGCg -3' miRNA: 3'- aAGUCGa-GCAGCUuUAGCaGCGGgUG- -5' |
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12843 | 3' | -53.5 | NC_003387.1 | + | 51365 | 0.66 | 0.779231 |
Target: 5'- --gAGCggUCGUCGggGUCGgCGUCCuCg -3' miRNA: 3'- aagUCG--AGCAGCuuUAGCaGCGGGuG- -5' |
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12843 | 3' | -53.5 | NC_003387.1 | + | 316 | 0.66 | 0.779231 |
Target: 5'- -aCAGCggGUCGAGGUgGUCGgCCu- -3' miRNA: 3'- aaGUCGagCAGCUUUAgCAGCgGGug -5' |
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12843 | 3' | -53.5 | NC_003387.1 | + | 25991 | 0.66 | 0.758468 |
Target: 5'- ---cGCUCGcCGggGUCGcgauccagcUCGCgCCGCg -3' miRNA: 3'- aaguCGAGCaGCuuUAGC---------AGCG-GGUG- -5' |
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12843 | 3' | -53.5 | NC_003387.1 | + | 4765 | 0.66 | 0.747877 |
Target: 5'- -cCAGCUCG-CGGugcuUCG-CGgCCCACa -3' miRNA: 3'- aaGUCGAGCaGCUuu--AGCaGC-GGGUG- -5' |
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12843 | 3' | -53.5 | NC_003387.1 | + | 24156 | 0.66 | 0.747877 |
Target: 5'- --gGGCgUCGUCGAcggcGAUCGccgccucggUCGCCCAa -3' miRNA: 3'- aagUCG-AGCAGCU----UUAGC---------AGCGGGUg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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