miRNA display CGI


Results 1 - 20 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12843 3' -53.5 NC_003387.1 + 51931 0.75 0.300468
Target:  5'- aUCAGCUUGcCGAGGUCGUCcugCCACa -3'
miRNA:   3'- aAGUCGAGCaGCUUUAGCAGcg-GGUG- -5'
12843 3' -53.5 NC_003387.1 + 51900 0.67 0.693316
Target:  5'- --aAGCUCGUCGAGGU-GcUGCCCGa -3'
miRNA:   3'- aagUCGAGCAGCUUUAgCaGCGGGUg -5'
12843 3' -53.5 NC_003387.1 + 51418 0.67 0.715412
Target:  5'- -----gUCGUCGA---CGUCGCCCGCc -3'
miRNA:   3'- aagucgAGCAGCUuuaGCAGCGGGUG- -5'
12843 3' -53.5 NC_003387.1 + 51365 0.66 0.779231
Target:  5'- --gAGCggUCGUCGggGUCGgCGUCCuCg -3'
miRNA:   3'- aagUCG--AGCAGCuuUAGCaGCGGGuG- -5'
12843 3' -53.5 NC_003387.1 + 51303 0.72 0.403299
Target:  5'- -cCAGCUCGUCGGcggCGgCGCCuCGCa -3'
miRNA:   3'- aaGUCGAGCAGCUuuaGCaGCGG-GUG- -5'
12843 3' -53.5 NC_003387.1 + 50428 0.66 0.789378
Target:  5'- -cCAGUUCcUUGAcuUCGUCGCUgGCg -3'
miRNA:   3'- aaGUCGAGcAGCUuuAGCAGCGGgUG- -5'
12843 3' -53.5 NC_003387.1 + 50407 0.68 0.682169
Target:  5'- --gAGCUguaCGUCGGgcggcaGAUCGUCGCCUcgGCg -3'
miRNA:   3'- aagUCGA---GCAGCU------UUAGCAGCGGG--UG- -5'
12843 3' -53.5 NC_003387.1 + 49801 0.7 0.514968
Target:  5'- -gCAGUUCGaCGAGAgCcUCGCCCGCg -3'
miRNA:   3'- aaGUCGAGCaGCUUUaGcAGCGGGUG- -5'
12843 3' -53.5 NC_003387.1 + 49437 0.82 0.099473
Target:  5'- gUCGGCggccgUGUCGggGUCGUCGUCCAUu -3'
miRNA:   3'- aAGUCGa----GCAGCuuUAGCAGCGGGUG- -5'
12843 3' -53.5 NC_003387.1 + 49192 0.67 0.726336
Target:  5'- -gCGGC-CGUCGAcGUUGcugaGCCCGCa -3'
miRNA:   3'- aaGUCGaGCAGCUuUAGCag--CGGGUG- -5'
12843 3' -53.5 NC_003387.1 + 48447 0.68 0.659736
Target:  5'- -gCAGUUCaUCGAGGguuaCGUCGaCCCGCu -3'
miRNA:   3'- aaGUCGAGcAGCUUUa---GCAGC-GGGUG- -5'
12843 3' -53.5 NC_003387.1 + 48164 0.72 0.422476
Target:  5'- -gCAGCUUGUCGGccuuGUCGuagUCGCCCGu -3'
miRNA:   3'- aaGUCGAGCAGCUu---UAGC---AGCGGGUg -5'
12843 3' -53.5 NC_003387.1 + 47176 0.71 0.492575
Target:  5'- cUUgAGCUgGUCGuAAUCGccgaacuUCGCCCGCu -3'
miRNA:   3'- -AAgUCGAgCAGCuUUAGC-------AGCGGGUG- -5'
12843 3' -53.5 NC_003387.1 + 46967 0.67 0.715412
Target:  5'- aUCAGCUCGUCGGccGAggCGUUcaGCUCGu -3'
miRNA:   3'- aAGUCGAGCAGCU--UUa-GCAG--CGGGUg -5'
12843 3' -53.5 NC_003387.1 + 46268 0.71 0.472708
Target:  5'- gUCGGaCUCGUUGGcgaCGcCGCCCACg -3'
miRNA:   3'- aAGUC-GAGCAGCUuuaGCaGCGGGUG- -5'
12843 3' -53.5 NC_003387.1 + 44677 0.67 0.693316
Target:  5'- -cCAGCUCGUCGAGcagauaggcUCGcgCGgCCACc -3'
miRNA:   3'- aaGUCGAGCAGCUUu--------AGCa-GCgGGUG- -5'
12843 3' -53.5 NC_003387.1 + 44380 0.67 0.726336
Target:  5'- -aCAGCggcaCGUCGggGUCGUCgagGUCgGCc -3'
miRNA:   3'- aaGUCGa---GCAGCuuUAGCAG---CGGgUG- -5'
12843 3' -53.5 NC_003387.1 + 44023 0.69 0.614635
Target:  5'- -gCGGCUCGUCGAcGUCgGUCGgCaGCg -3'
miRNA:   3'- aaGUCGAGCAGCUuUAG-CAGCgGgUG- -5'
12843 3' -53.5 NC_003387.1 + 43295 0.74 0.308211
Target:  5'- cUCGGCgcccgCGUCGuacUCGUCGgCCCACu -3'
miRNA:   3'- aAGUCGa----GCAGCuuuAGCAGC-GGGUG- -5'
12843 3' -53.5 NC_003387.1 + 42703 0.91 0.023749
Target:  5'- cUUCGGCUCGUCGucGUCGUCGCCCGg -3'
miRNA:   3'- -AAGUCGAGCAGCuuUAGCAGCGGGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.