Results 1 - 20 of 257 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12844 | 3' | -59.5 | NC_003387.1 | + | 49163 | 0.66 | 0.521068 |
Target: 5'- aCaCCAGCGcgcaGGCggUCGcgcaggCGGCGGCc -3' miRNA: 3'- gGcGGUCGUa---CCGuuGGCa-----GCCGCCG- -5' |
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12844 | 3' | -59.5 | NC_003387.1 | + | 20509 | 0.66 | 0.494776 |
Target: 5'- cUCGCgCAGCGcGGCGucgcGCuCGUCGGUgacgacgcgcagcucGGCg -3' miRNA: 3'- -GGCG-GUCGUaCCGU----UG-GCAGCCG---------------CCG- -5' |
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12844 | 3' | -59.5 | NC_003387.1 | + | 20361 | 0.66 | 0.490784 |
Target: 5'- cCCGCCucguGCGggGGUugugUCGUUuaGGCGGCg -3' miRNA: 3'- -GGCGGu---CGUa-CCGuu--GGCAG--CCGCCG- -5' |
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12844 | 3' | -59.5 | NC_003387.1 | + | 31362 | 0.66 | 0.490784 |
Target: 5'- gCaCCGGCcagGGCAG-CGUCGGCuGCa -3' miRNA: 3'- gGcGGUCGua-CCGUUgGCAGCCGcCG- -5' |
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12844 | 3' | -59.5 | NC_003387.1 | + | 27146 | 0.66 | 0.490784 |
Target: 5'- cCCGCCGGgGUcGGCG-CCGcCGG-GGa -3' miRNA: 3'- -GGCGGUCgUA-CCGUuGGCaGCCgCCg -5' |
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12844 | 3' | -59.5 | NC_003387.1 | + | 6377 | 0.66 | 0.490784 |
Target: 5'- uCgGCC-GCG-GGCGACgccuugCGUgGGCGGCc -3' miRNA: 3'- -GgCGGuCGUaCCGUUG------GCAgCCGCCG- -5' |
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12844 | 3' | -59.5 | NC_003387.1 | + | 4346 | 0.66 | 0.489789 |
Target: 5'- cCCGCUuGCgaauGUGGUugcccuuGGCgCGcUCGGCGGCc -3' miRNA: 3'- -GGCGGuCG----UACCG-------UUG-GC-AGCCGCCG- -5' |
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12844 | 3' | -59.5 | NC_003387.1 | + | 40280 | 0.66 | 0.480871 |
Target: 5'- gCCGCCAGCG----AACC-UCGGCaGCg -3' miRNA: 3'- -GGCGGUCGUaccgUUGGcAGCCGcCG- -5' |
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12844 | 3' | -59.5 | NC_003387.1 | + | 15638 | 0.66 | 0.471056 |
Target: 5'- gCGCaCGGCGaGGuCGACCauGUCGGCGa- -3' miRNA: 3'- gGCG-GUCGUaCC-GUUGG--CAGCCGCcg -5' |
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12844 | 3' | -59.5 | NC_003387.1 | + | 35081 | 0.66 | 0.49778 |
Target: 5'- uUGUCGGUcgGGCcgaggcucGCCuucaacgguucgagGUCGGCGGCc -3' miRNA: 3'- gGCGGUCGuaCCGu-------UGG--------------CAGCCGCCG- -5' |
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12844 | 3' | -59.5 | NC_003387.1 | + | 20265 | 0.66 | 0.499787 |
Target: 5'- aCGCCcGCAUGGCGcuaggcacugcggGCCGaUCuGGC-GCu -3' miRNA: 3'- gGCGGuCGUACCGU-------------UGGC-AG-CCGcCG- -5' |
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12844 | 3' | -59.5 | NC_003387.1 | + | 2902 | 0.66 | 0.500792 |
Target: 5'- cUCGCCgGGCGcGGCAgGCCG-CGGgcgaGGCu -3' miRNA: 3'- -GGCGG-UCGUaCCGU-UGGCaGCCg---CCG- -5' |
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12844 | 3' | -59.5 | NC_003387.1 | + | 42259 | 0.66 | 0.521068 |
Target: 5'- aUCGCCAuGCcaccGGCGACCGaCaGCGcGCu -3' miRNA: 3'- -GGCGGU-CGua--CCGUUGGCaGcCGC-CG- -5' |
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12844 | 3' | -59.5 | NC_003387.1 | + | 14191 | 0.66 | 0.521068 |
Target: 5'- gCGCCAcCAUGaC-GCCGUCGGC-GCu -3' miRNA: 3'- gGCGGUcGUACcGuUGGCAGCCGcCG- -5' |
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12844 | 3' | -59.5 | NC_003387.1 | + | 37431 | 0.66 | 0.520046 |
Target: 5'- gUCGCCGGUgccggugucGUgcaacaucuccucGGCGucgACCGacuucUCGGCGGCg -3' miRNA: 3'- -GGCGGUCG---------UA-------------CCGU---UGGC-----AGCCGCCG- -5' |
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12844 | 3' | -59.5 | NC_003387.1 | + | 3550 | 0.66 | 0.510888 |
Target: 5'- gCCGCC-GCcUGcGCGACCGcCuGCGcGCu -3' miRNA: 3'- -GGCGGuCGuAC-CGUUGGCaGcCGC-CG- -5' |
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12844 | 3' | -59.5 | NC_003387.1 | + | 7138 | 0.66 | 0.510888 |
Target: 5'- -aGCCAcGCGaGGCccggcuccucGGCCGUgccgacgagcUGGCGGCg -3' miRNA: 3'- ggCGGU-CGUaCCG----------UUGGCA----------GCCGCCG- -5' |
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12844 | 3' | -59.5 | NC_003387.1 | + | 46706 | 0.66 | 0.510888 |
Target: 5'- -aGCCucuuggaugAGCGaGGCGACC-UCGGCGcGUg -3' miRNA: 3'- ggCGG---------UCGUaCCGUUGGcAGCCGC-CG- -5' |
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12844 | 3' | -59.5 | NC_003387.1 | + | 45441 | 0.66 | 0.500792 |
Target: 5'- aCCGCCgGGCGUGaacgucacGCcgaacCCGUCaGCGGUg -3' miRNA: 3'- -GGCGG-UCGUAC--------CGuu---GGCAGcCGCCG- -5' |
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12844 | 3' | -59.5 | NC_003387.1 | + | 32604 | 0.66 | 0.500792 |
Target: 5'- gUGUCGGUGUuGguGCCGUCGGUguaccuGGCg -3' miRNA: 3'- gGCGGUCGUAcCguUGGCAGCCG------CCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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