miRNA display CGI


Results 1 - 20 of 257 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12844 3' -59.5 NC_003387.1 + 15276 1.12 0.000233
Target:  5'- gCCGCCAGCAUGGCAACCGUCGGCGGCu -3'
miRNA:   3'- -GGCGGUCGUACCGUUGGCAGCCGCCG- -5'
12844 3' -59.5 NC_003387.1 + 50684 0.9 0.010636
Target:  5'- gCgGCCAGCucggcgacGGCGGCCGUCGGCGGCa -3'
miRNA:   3'- -GgCGGUCGua------CCGUUGGCAGCCGCCG- -5'
12844 3' -59.5 NC_003387.1 + 40494 0.81 0.049867
Target:  5'- gCGCCGcuGCGcUGGCGACCGcCGGUGGCc -3'
miRNA:   3'- gGCGGU--CGU-ACCGUUGGCaGCCGCCG- -5'
12844 3' -59.5 NC_003387.1 + 3677 0.8 0.064243
Target:  5'- gCGCCAGCAgcGCAACCGUCGaGcCGGUg -3'
miRNA:   3'- gGCGGUCGUacCGUUGGCAGC-C-GCCG- -5'
12844 3' -59.5 NC_003387.1 + 13618 0.79 0.067376
Target:  5'- gCGCUGGCAccgGGUGaguucaacccggccACCGUCGGCGGCg -3'
miRNA:   3'- gGCGGUCGUa--CCGU--------------UGGCAGCCGCCG- -5'
12844 3' -59.5 NC_003387.1 + 12956 0.78 0.078116
Target:  5'- aCGUCGGCGucUGGCGGCUGUaccgGGCGGCc -3'
miRNA:   3'- gGCGGUCGU--ACCGUUGGCAg---CCGCCG- -5'
12844 3' -59.5 NC_003387.1 + 8762 0.78 0.087288
Target:  5'- uUCGCCAuGCG-GGCcuucGCCGUgCGGCGGCg -3'
miRNA:   3'- -GGCGGU-CGUaCCGu---UGGCA-GCCGCCG- -5'
12844 3' -59.5 NC_003387.1 + 9012 0.78 0.087288
Target:  5'- gCCGCCgucgAGCAccUGGCGggcGCCGUCGGCGa- -3'
miRNA:   3'- -GGCGG----UCGU--ACCGU---UGGCAGCCGCcg -5'
12844 3' -59.5 NC_003387.1 + 36698 0.77 0.089489
Target:  5'- aCGCCGauaagcuGCAUGa-AACCGUCGGCGGCc -3'
miRNA:   3'- gGCGGU-------CGUACcgUUGGCAGCCGCCG- -5'
12844 3' -59.5 NC_003387.1 + 17517 0.77 0.09483
Target:  5'- uCgGCCAGCAUGcGCAGCgGcUCGGcCGGUa -3'
miRNA:   3'- -GgCGGUCGUAC-CGUUGgC-AGCC-GCCG- -5'
12844 3' -59.5 NC_003387.1 + 52261 0.77 0.100197
Target:  5'- gCGCCGGUcgccGUcGGCcGCCG-CGGCGGCg -3'
miRNA:   3'- gGCGGUCG----UA-CCGuUGGCaGCCGCCG- -5'
12844 3' -59.5 NC_003387.1 + 40338 0.76 0.114892
Target:  5'- aUCGCCuGCAgcagcGGCAgauugcggGCCGUcgCGGCGGCg -3'
miRNA:   3'- -GGCGGuCGUa----CCGU--------UGGCA--GCCGCCG- -5'
12844 3' -59.5 NC_003387.1 + 22147 0.76 0.114892
Target:  5'- cCCGCacucgCGGCAcGGCGcguACCGgccgCGGCGGCg -3'
miRNA:   3'- -GGCG-----GUCGUaCCGU---UGGCa---GCCGCCG- -5'
12844 3' -59.5 NC_003387.1 + 25798 0.76 0.120986
Target:  5'- cCUGCuCGGCggccucgGUGGCGGCCugcUCGGCGGCc -3'
miRNA:   3'- -GGCG-GUCG-------UACCGUUGGc--AGCCGCCG- -5'
12844 3' -59.5 NC_003387.1 + 22046 0.76 0.121315
Target:  5'- cCCGCCGGU---GCGACCGggUCGGgGGCg -3'
miRNA:   3'- -GGCGGUCGuacCGUUGGC--AGCCgCCG- -5'
12844 3' -59.5 NC_003387.1 + 27517 0.75 0.128072
Target:  5'- aCGUCAGCAccaugaUGcGCuGCCG-CGGCGGCg -3'
miRNA:   3'- gGCGGUCGU------AC-CGuUGGCaGCCGCCG- -5'
12844 3' -59.5 NC_003387.1 + 28801 0.75 0.129464
Target:  5'- -aGCCAGCcgGGCAGCuCGacgacguucagccccUCGGCGcGCa -3'
miRNA:   3'- ggCGGUCGuaCCGUUG-GC---------------AGCCGC-CG- -5'
12844 3' -59.5 NC_003387.1 + 49167 0.75 0.134811
Target:  5'- gCCGCCcucguugAGCGccUGaGCAGCCGccuggggCGGCGGCg -3'
miRNA:   3'- -GGCGG-------UCGU--AC-CGUUGGCa------GCCGCCG- -5'
12844 3' -59.5 NC_003387.1 + 36574 0.75 0.135175
Target:  5'- aUGCUGGCG-GGCAACacauUCGGCGGCa -3'
miRNA:   3'- gGCGGUCGUaCCGUUGgc--AGCCGCCG- -5'
12844 3' -59.5 NC_003387.1 + 33393 0.75 0.137745
Target:  5'- gCCGCC-GCA-GGCAcauucacgcgcgagGCCGUUGuGCGGCu -3'
miRNA:   3'- -GGCGGuCGUaCCGU--------------UGGCAGC-CGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.