miRNA display CGI


Results 1 - 20 of 257 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12844 3' -59.5 NC_003387.1 + 196 0.72 0.222677
Target:  5'- gCCGCCAGCucGGCGGCUuGUCGcucuugucGCGGUu -3'
miRNA:   3'- -GGCGGUCGuaCCGUUGG-CAGC--------CGCCG- -5'
12844 3' -59.5 NC_003387.1 + 456 0.7 0.278902
Target:  5'- gCCGCC-GC--GGCGGCCGaCGGCgaccGGCg -3'
miRNA:   3'- -GGCGGuCGuaCCGUUGGCaGCCG----CCG- -5'
12844 3' -59.5 NC_003387.1 + 505 0.73 0.17639
Target:  5'- gCGCCcGCGUGGCGACCG-CGGUu-- -3'
miRNA:   3'- gGCGGuCGUACCGUUGGCaGCCGccg -5'
12844 3' -59.5 NC_003387.1 + 543 0.7 0.278902
Target:  5'- cCUGCCcGCGaucUGGCuGCCcugacgCGGCGGCu -3'
miRNA:   3'- -GGCGGuCGU---ACCGuUGGca----GCCGCCG- -5'
12844 3' -59.5 NC_003387.1 + 617 0.66 0.510888
Target:  5'- -gGCCgAGCAgggcgagGGCAG-CGUCGccgccGCGGCa -3'
miRNA:   3'- ggCGG-UCGUa------CCGUUgGCAGC-----CGCCG- -5'
12844 3' -59.5 NC_003387.1 + 712 0.71 0.265499
Target:  5'- gCGCCgcaaGGCAUcgugucgacGGCcuGGCCGUCGGUGcGCg -3'
miRNA:   3'- gGCGG----UCGUA---------CCG--UUGGCAGCCGC-CG- -5'
12844 3' -59.5 NC_003387.1 + 744 0.67 0.432861
Target:  5'- gCGCCAGgAUgcggucGGCcACCG-CGGCaGCg -3'
miRNA:   3'- gGCGGUCgUA------CCGuUGGCaGCCGcCG- -5'
12844 3' -59.5 NC_003387.1 + 1151 0.67 0.43007
Target:  5'- cCUGCguGCAUgcgcggugcuuagcGGCAGCgGUagCGGCGGg -3'
miRNA:   3'- -GGCGguCGUA--------------CCGUUGgCA--GCCGCCg -5'
12844 3' -59.5 NC_003387.1 + 1193 0.67 0.442243
Target:  5'- gCGCaggGGCAagGGUGGCCGUCGacGgGGCa -3'
miRNA:   3'- gGCGg--UCGUa-CCGUUGGCAGC--CgCCG- -5'
12844 3' -59.5 NC_003387.1 + 1502 0.68 0.363059
Target:  5'- -gGUCAGCGUGcacCAGCCGgucgugaagucggggCGGUGGCa -3'
miRNA:   3'- ggCGGUCGUACc--GUUGGCa--------------GCCGCCG- -5'
12844 3' -59.5 NC_003387.1 + 1604 0.7 0.300008
Target:  5'- gUCGCaCGGCcUGGCGAUUucgGUCGGCGcGUg -3'
miRNA:   3'- -GGCG-GUCGuACCGUUGG---CAGCCGC-CG- -5'
12844 3' -59.5 NC_003387.1 + 1657 0.68 0.370608
Target:  5'- gCCGCCacgucgaggaGGUGUgGGCcgguACCGacaccgCGGCGGCg -3'
miRNA:   3'- -GGCGG----------UCGUA-CCGu---UGGCa-----GCCGCCG- -5'
12844 3' -59.5 NC_003387.1 + 1749 0.71 0.252622
Target:  5'- aUCGaCAGCAUGaGC--CCGgCGGCGGCg -3'
miRNA:   3'- -GGCgGUCGUAC-CGuuGGCaGCCGCCG- -5'
12844 3' -59.5 NC_003387.1 + 2046 0.71 0.234276
Target:  5'- gUCGCCgAGC-UGGCcGCgGU-GGCGGCg -3'
miRNA:   3'- -GGCGG-UCGuACCGuUGgCAgCCGCCG- -5'
12844 3' -59.5 NC_003387.1 + 2169 0.72 0.228414
Target:  5'- gCCGCgAGCAgcucggcgccuUGGUcGCCGacaugUGGCGGCu -3'
miRNA:   3'- -GGCGgUCGU-----------ACCGuUGGCa----GCCGCCG- -5'
12844 3' -59.5 NC_003387.1 + 2196 0.69 0.345864
Target:  5'- aCCGCgGGCucagGGguGCCucgugcucgccgGUCaGGCGGCc -3'
miRNA:   3'- -GGCGgUCGua--CCguUGG------------CAG-CCGCCG- -5'
12844 3' -59.5 NC_003387.1 + 2292 0.68 0.373997
Target:  5'- gCGCCAGCGacgaagucaaggaacUGGCGaaGCUGUCGGUc-- -3'
miRNA:   3'- gGCGGUCGU---------------ACCGU--UGGCAGCCGccg -5'
12844 3' -59.5 NC_003387.1 + 2321 0.7 0.285107
Target:  5'- gCCGCCcgacguacagcucGGCGgugucgaGGCcGCCGUCGGCGucgaGCg -3'
miRNA:   3'- -GGCGG-------------UCGUa------CCGuUGGCAGCCGC----CG- -5'
12844 3' -59.5 NC_003387.1 + 2902 0.66 0.500792
Target:  5'- cUCGCCgGGCGcGGCAgGCCG-CGGgcgaGGCu -3'
miRNA:   3'- -GGCGG-UCGUaCCGU-UGGCaGCCg---CCG- -5'
12844 3' -59.5 NC_003387.1 + 3148 0.72 0.228414
Target:  5'- aCCGcCCGGCAgcgGGCGcACC-UCGGCgaGGCc -3'
miRNA:   3'- -GGC-GGUCGUa--CCGU-UGGcAGCCG--CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.