miRNA display CGI


Results 1 - 20 of 257 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12844 3' -59.5 NC_003387.1 + 40494 0.81 0.049867
Target:  5'- gCGCCGcuGCGcUGGCGACCGcCGGUGGCc -3'
miRNA:   3'- gGCGGU--CGU-ACCGUUGGCaGCCGCCG- -5'
12844 3' -59.5 NC_003387.1 + 33640 0.72 0.21157
Target:  5'- aCGCCuacacgcuGCAgGGCAucACCGUggcccUGGCGGCg -3'
miRNA:   3'- gGCGGu-------CGUaCCGU--UGGCA-----GCCGCCG- -5'
12844 3' -59.5 NC_003387.1 + 45563 0.72 0.222677
Target:  5'- gCCGCCAGCucgucGGCAcgGCCGaggagccgggccUCGcGUGGCu -3'
miRNA:   3'- -GGCGGUCGua---CCGU--UGGC------------AGC-CGCCG- -5'
12844 3' -59.5 NC_003387.1 + 49163 0.66 0.521068
Target:  5'- aCaCCAGCGcgcaGGCggUCGcgcaggCGGCGGCc -3'
miRNA:   3'- gGcGGUCGUa---CCGuuGGCa-----GCCGCCG- -5'
12844 3' -59.5 NC_003387.1 + 36574 0.75 0.135175
Target:  5'- aUGCUGGCG-GGCAACacauUCGGCGGCa -3'
miRNA:   3'- gGCGGUCGUaCCGUUGgc--AGCCGCCG- -5'
12844 3' -59.5 NC_003387.1 + 33393 0.75 0.137745
Target:  5'- gCCGCC-GCA-GGCAcauucacgcgcgagGCCGUUGuGCGGCu -3'
miRNA:   3'- -GGCGGuCGUaCCGU--------------UGGCAGC-CGCCG- -5'
12844 3' -59.5 NC_003387.1 + 34201 0.74 0.150478
Target:  5'- aCGCCuGCGU-GCcACCG-CGGCGGCc -3'
miRNA:   3'- gGCGGuCGUAcCGuUGGCaGCCGCCG- -5'
12844 3' -59.5 NC_003387.1 + 50344 0.74 0.1604
Target:  5'- gCCGCCcgcGGCAacgugaccgcguacgUGGCGcucgacGCCGaCGGCGGCc -3'
miRNA:   3'- -GGCGG---UCGU---------------ACCGU------UGGCaGCCGCCG- -5'
12844 3' -59.5 NC_003387.1 + 48983 0.73 0.17639
Target:  5'- aCGCgGGCAU-GCGGCCGUCGaucgcGUGGCu -3'
miRNA:   3'- gGCGgUCGUAcCGUUGGCAGC-----CGCCG- -5'
12844 3' -59.5 NC_003387.1 + 5010 0.72 0.200943
Target:  5'- uUCGaCCAGCAcGGCAGgcucaCGagGGCGGCg -3'
miRNA:   3'- -GGC-GGUCGUaCCGUUg----GCagCCGCCG- -5'
12844 3' -59.5 NC_003387.1 + 26932 0.73 0.181077
Target:  5'- uUCGCCGGgcUGGC--CUGUCGGCGGUc -3'
miRNA:   3'- -GGCGGUCguACCGuuGGCAGCCGCCG- -5'
12844 3' -59.5 NC_003387.1 + 40127 0.73 0.175005
Target:  5'- gCGUCGGgcaaguucaaggccCAcGGCGacACCGUCGGCGGCc -3'
miRNA:   3'- gGCGGUC--------------GUaCCGU--UGGCAGCCGCCG- -5'
12844 3' -59.5 NC_003387.1 + 13618 0.79 0.067376
Target:  5'- gCGCUGGCAccgGGUGaguucaacccggccACCGUCGGCGGCg -3'
miRNA:   3'- gGCGGUCGUa--CCGU--------------UGGCAGCCGCCG- -5'
12844 3' -59.5 NC_003387.1 + 10468 0.73 0.190783
Target:  5'- gUCGCCgguGGCAUGGCGAUCGccaaggUUGGCaGCa -3'
miRNA:   3'- -GGCGG---UCGUACCGUUGGC------AGCCGcCG- -5'
12844 3' -59.5 NC_003387.1 + 12956 0.78 0.078116
Target:  5'- aCGUCGGCGucUGGCGGCUGUaccgGGCGGCc -3'
miRNA:   3'- gGCGGUCGU--ACCGUUGGCAg---CCGCCG- -5'
12844 3' -59.5 NC_003387.1 + 21645 0.73 0.171811
Target:  5'- gCGUCAGCucguCGACCG-CGGCGGCg -3'
miRNA:   3'- gGCGGUCGuaccGUUGGCaGCCGCCG- -5'
12844 3' -59.5 NC_003387.1 + 18880 0.73 0.195806
Target:  5'- gUCGCgAGCAUcaucGaGCugcuuaaagacGCCGUCGGCGGCg -3'
miRNA:   3'- -GGCGgUCGUA----C-CGu----------UGGCAGCCGCCG- -5'
12844 3' -59.5 NC_003387.1 + 22044 0.72 0.222677
Target:  5'- uCCGUgGGCgGUGGCGgcgaucaccggcACCGUUGGCgacGGCg -3'
miRNA:   3'- -GGCGgUCG-UACCGU------------UGGCAGCCG---CCG- -5'
12844 3' -59.5 NC_003387.1 + 25798 0.76 0.120986
Target:  5'- cCUGCuCGGCggccucgGUGGCGGCCugcUCGGCGGCc -3'
miRNA:   3'- -GGCG-GUCG-------UACCGUUGGc--AGCCGCCG- -5'
12844 3' -59.5 NC_003387.1 + 28410 0.74 0.14651
Target:  5'- aUCGCCgAGCAgacccGGCuGCUG-CGGCGGCu -3'
miRNA:   3'- -GGCGG-UCGUa----CCGuUGGCaGCCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.