Results 1 - 20 of 125 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12852 | 3' | -55.4 | NC_003387.1 | + | 51368 | 0.66 | 0.741215 |
Target: 5'- cGGUCGuCGG-GgUCGGCGUcCuCGuCGGCg -3' miRNA: 3'- -CCAGC-GUCaCgAGCUGCAuG-GC-GUCG- -5' |
|||||||
12852 | 3' | -55.4 | NC_003387.1 | + | 20203 | 0.66 | 0.688106 |
Target: 5'- -cUCGCAcgGC-CgGGCGUGCaCGCAGCg -3' miRNA: 3'- ccAGCGUcaCGaG-CUGCAUG-GCGUCG- -5' |
|||||||
12852 | 3' | -55.4 | NC_003387.1 | + | 33246 | 0.66 | 0.698878 |
Target: 5'- --aCGUAcGUGCUCGACGacguccUGCC-CGGCc -3' miRNA: 3'- ccaGCGU-CACGAGCUGC------AUGGcGUCG- -5' |
|||||||
12852 | 3' | -55.4 | NC_003387.1 | + | 46659 | 0.66 | 0.741215 |
Target: 5'- cGGUCGUcauGGUgcGCUCGAaccUGCC-CGGCg -3' miRNA: 3'- -CCAGCG---UCA--CGAGCUgc-AUGGcGUCG- -5' |
|||||||
12852 | 3' | -55.4 | NC_003387.1 | + | 46503 | 0.66 | 0.698878 |
Target: 5'- aGGUguucCGCAGcucGCUCGGCG-ACUGCAccaacgGCg -3' miRNA: 3'- -CCA----GCGUCa--CGAGCUGCaUGGCGU------CG- -5' |
|||||||
12852 | 3' | -55.4 | NC_003387.1 | + | 34280 | 0.66 | 0.698878 |
Target: 5'- cGUCaCGGUGCgCG-CGUACaCGUGGCu -3' miRNA: 3'- cCAGcGUCACGaGCuGCAUG-GCGUCG- -5' |
|||||||
12852 | 3' | -55.4 | NC_003387.1 | + | 46171 | 0.66 | 0.698878 |
Target: 5'- uGGUgCGCcGUgucccgGCUCGcAUGUAuCUGCAGCg -3' miRNA: 3'- -CCA-GCGuCA------CGAGC-UGCAU-GGCGUCG- -5' |
|||||||
12852 | 3' | -55.4 | NC_003387.1 | + | 4004 | 0.66 | 0.708518 |
Target: 5'- cGUCGCggcgcacGGUGCUCGACaa--CGCcaAGCg -3' miRNA: 3'- cCAGCG-------UCACGAGCUGcaugGCG--UCG- -5' |
|||||||
12852 | 3' | -55.4 | NC_003387.1 | + | 44205 | 0.66 | 0.709586 |
Target: 5'- ---gGCAGUGCUgGGUGUAacCCGUAGUg -3' miRNA: 3'- ccagCGUCACGAgCUGCAU--GGCGUCG- -5' |
|||||||
12852 | 3' | -55.4 | NC_003387.1 | + | 20381 | 0.66 | 0.688106 |
Target: 5'- uGUCGUuuAG-GCggCGAUcaGCCGCAGCg -3' miRNA: 3'- cCAGCG--UCaCGa-GCUGcaUGGCGUCG- -5' |
|||||||
12852 | 3' | -55.4 | NC_003387.1 | + | 28795 | 0.66 | 0.688106 |
Target: 5'- cGGUCGagccagcCGGgcaGCUCGACGacguucagccccucgGCgCGCAGCa -3' miRNA: 3'- -CCAGC-------GUCa--CGAGCUGCa--------------UG-GCGUCG- -5' |
|||||||
12852 | 3' | -55.4 | NC_003387.1 | + | 18197 | 0.66 | 0.709586 |
Target: 5'- gGGUCGaCGGgcaGCcCGAgG-AUCGCGGCg -3' miRNA: 3'- -CCAGC-GUCa--CGaGCUgCaUGGCGUCG- -5' |
|||||||
12852 | 3' | -55.4 | NC_003387.1 | + | 6675 | 0.66 | 0.739133 |
Target: 5'- cGGUgcgcUGCAGauccucgacgacGCUCGGCGUcuugcACCGCGGg -3' miRNA: 3'- -CCA----GCGUCa-----------CGAGCUGCA-----UGGCGUCg -5' |
|||||||
12852 | 3' | -55.4 | NC_003387.1 | + | 31724 | 0.66 | 0.730766 |
Target: 5'- cGG-CGCuGUcGC-CGACGagagcUAUCGCGGCa -3' miRNA: 3'- -CCaGCGuCA-CGaGCUGC-----AUGGCGUCG- -5' |
|||||||
12852 | 3' | -55.4 | NC_003387.1 | + | 19443 | 0.66 | 0.730766 |
Target: 5'- cGUCGuCGGUGUcggggaUCGGCGgcagGCCG-GGCa -3' miRNA: 3'- cCAGC-GUCACG------AGCUGCa---UGGCgUCG- -5' |
|||||||
12852 | 3' | -55.4 | NC_003387.1 | + | 14528 | 0.66 | 0.730766 |
Target: 5'- --gUGCGGUaCUCGGCGgccggGCCGUuGCg -3' miRNA: 3'- ccaGCGUCAcGAGCUGCa----UGGCGuCG- -5' |
|||||||
12852 | 3' | -55.4 | NC_003387.1 | + | 17080 | 0.66 | 0.729715 |
Target: 5'- aGGUCGgcCAGUGCccgcccggccgccUCGGCGggcuccucgggGCCGUAGg -3' miRNA: 3'- -CCAGC--GUCACG-------------AGCUGCa----------UGGCGUCg -5' |
|||||||
12852 | 3' | -55.4 | NC_003387.1 | + | 41024 | 0.66 | 0.720219 |
Target: 5'- -aUCGCGacaGCgagccCGACG-ACCGCGGCg -3' miRNA: 3'- ccAGCGUca-CGa----GCUGCaUGGCGUCG- -5' |
|||||||
12852 | 3' | -55.4 | NC_003387.1 | + | 44038 | 0.66 | 0.720219 |
Target: 5'- cGGUCgGCAG----CGGCGUGCCGaaCGGCg -3' miRNA: 3'- -CCAG-CGUCacgaGCUGCAUGGC--GUCG- -5' |
|||||||
12852 | 3' | -55.4 | NC_003387.1 | + | 24510 | 0.66 | 0.709586 |
Target: 5'- cGUCGCGGcugcGCUUGcCGaGCUGCAGg -3' miRNA: 3'- cCAGCGUCa---CGAGCuGCaUGGCGUCg -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home