miRNA display CGI


Results 1 - 20 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12852 3' -55.4 NC_003387.1 + 11069 0.97 0.007204
Target:  5'- aGGUCGCAGUcgUCGACGUACCGCAGCg -3'
miRNA:   3'- -CCAGCGUCAcgAGCUGCAUGGCGUCG- -5'
12852 3' -55.4 NC_003387.1 + 39580 0.85 0.053098
Target:  5'- --aCGCGGUGCUCGGCGUccucaagcugcGCCGCGGUg -3'
miRNA:   3'- ccaGCGUCACGAGCUGCA-----------UGGCGUCG- -5'
12852 3' -55.4 NC_003387.1 + 22465 0.82 0.084037
Target:  5'- -cUCGCGGUaCUCGACG-ACCGCGGCg -3'
miRNA:   3'- ccAGCGUCAcGAGCUGCaUGGCGUCG- -5'
12852 3' -55.4 NC_003387.1 + 10941 0.8 0.124256
Target:  5'- aGGUCGCGGcacgcgcccgGCUUGACGUcgaggucgcacacACCGCGGCc -3'
miRNA:   3'- -CCAGCGUCa---------CGAGCUGCA-------------UGGCGUCG- -5'
12852 3' -55.4 NC_003387.1 + 27950 0.79 0.14705
Target:  5'- cGGUCGgGGcGCUCGGCGUgcucggcuugGCCGguGCc -3'
miRNA:   3'- -CCAGCgUCaCGAGCUGCA----------UGGCguCG- -5'
12852 3' -55.4 NC_003387.1 + 24815 0.78 0.159609
Target:  5'- uGG-CGCAGcaGCUCGGCGUACUcggGCGGCu -3'
miRNA:   3'- -CCaGCGUCa-CGAGCUGCAUGG---CGUCG- -5'
12852 3' -55.4 NC_003387.1 + 17505 0.78 0.168511
Target:  5'- cGGcCGUAGUGCUCGGCcaGCaugCGCAGCg -3'
miRNA:   3'- -CCaGCGUCACGAGCUGcaUG---GCGUCG- -5'
12852 3' -55.4 NC_003387.1 + 48768 0.77 0.175005
Target:  5'- --aCGCGGUGCUCGGCGcagccagcucgccgcUgaucGCCGCGGCg -3'
miRNA:   3'- ccaGCGUCACGAGCUGC---------------A----UGGCGUCG- -5'
12852 3' -55.4 NC_003387.1 + 11431 0.77 0.182699
Target:  5'- uGUCGuCGGUGCUCGugccCGcGCUGCAGCu -3'
miRNA:   3'- cCAGC-GUCACGAGCu---GCaUGGCGUCG- -5'
12852 3' -55.4 NC_003387.1 + 21929 0.77 0.192735
Target:  5'- -aUUGUGGUGCUCGGCGgcggggGCgGCGGCa -3'
miRNA:   3'- ccAGCGUCACGAGCUGCa-----UGgCGUCG- -5'
12852 3' -55.4 NC_003387.1 + 21538 0.76 0.214262
Target:  5'- cGUCGC---GUUCGACGUGCCGCccGGCa -3'
miRNA:   3'- cCAGCGucaCGAGCUGCAUGGCG--UCG- -5'
12852 3' -55.4 NC_003387.1 + 45062 0.75 0.250391
Target:  5'- aGGUUGUAGUcCUCGACGUcGCCGU-GCa -3'
miRNA:   3'- -CCAGCGUCAcGAGCUGCA-UGGCGuCG- -5'
12852 3' -55.4 NC_003387.1 + 16810 0.75 0.250391
Target:  5'- -uUCGCcuuuucgGcCUUGACGUACCGCAGCa -3'
miRNA:   3'- ccAGCGuca----C-GAGCUGCAUGGCGUCG- -5'
12852 3' -55.4 NC_003387.1 + 10610 0.74 0.270271
Target:  5'- cGGUCGCcucGGUcauGCagGACGcgACCGCGGCg -3'
miRNA:   3'- -CCAGCG---UCA---CGagCUGCa-UGGCGUCG- -5'
12852 3' -55.4 NC_003387.1 + 1268 0.74 0.270271
Target:  5'- cGGUUGCGGUGCggcugcgCGGCGUucgACCggcGCAGUu -3'
miRNA:   3'- -CCAGCGUCACGa------GCUGCA---UGG---CGUCG- -5'
12852 3' -55.4 NC_003387.1 + 14713 0.74 0.284217
Target:  5'- cGUUGCGGUGCaCGGCuUGCUGCGGUc -3'
miRNA:   3'- cCAGCGUCACGaGCUGcAUGGCGUCG- -5'
12852 3' -55.4 NC_003387.1 + 26291 0.73 0.313803
Target:  5'- cGUCGCAaUGCUCGGCGUgGCUGUcguGCu -3'
miRNA:   3'- cCAGCGUcACGAGCUGCA-UGGCGu--CG- -5'
12852 3' -55.4 NC_003387.1 + 38821 0.73 0.321554
Target:  5'- aGUUGuUAGcugGCUCGACGagccGCCGCAGCu -3'
miRNA:   3'- cCAGC-GUCa--CGAGCUGCa---UGGCGUCG- -5'
12852 3' -55.4 NC_003387.1 + 16322 0.73 0.329448
Target:  5'- cGG-CGcCGGUG-UCGAUGUugACCGCGGCg -3'
miRNA:   3'- -CCaGC-GUCACgAGCUGCA--UGGCGUCG- -5'
12852 3' -55.4 NC_003387.1 + 48428 0.73 0.337484
Target:  5'- gGGUCGCGGUGCgcugcuCGc-CCGCGGCc -3'
miRNA:   3'- -CCAGCGUCACGagcu--GCauGGCGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.