miRNA display CGI


Results 1 - 20 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12852 3' -55.4 NC_003387.1 + 48768 0.77 0.175005
Target:  5'- --aCGCGGUGCUCGGCGcagccagcucgccgcUgaucGCCGCGGCg -3'
miRNA:   3'- ccaGCGUCACGAGCUGC---------------A----UGGCGUCG- -5'
12852 3' -55.4 NC_003387.1 + 41755 0.7 0.494584
Target:  5'- uGGcCGCGGUGUggugcgaccUCGACGUcaaGCCG-GGCg -3'
miRNA:   3'- -CCaGCGUCACG---------AGCUGCA---UGGCgUCG- -5'
12852 3' -55.4 NC_003387.1 + 49678 0.7 0.504882
Target:  5'- cGGUCgaGCAGUGCUgaGCGUGCaGCccGGCa -3'
miRNA:   3'- -CCAG--CGUCACGAgcUGCAUGgCG--UCG- -5'
12852 3' -55.4 NC_003387.1 + 46659 0.66 0.741215
Target:  5'- cGGUCGUcauGGUgcGCUCGAaccUGCC-CGGCg -3'
miRNA:   3'- -CCAGCG---UCA--CGAGCUgc-AUGGcGUCG- -5'
12852 3' -55.4 NC_003387.1 + 26291 0.73 0.313803
Target:  5'- cGUCGCAaUGCUCGGCGUgGCUGUcguGCu -3'
miRNA:   3'- cCAGCGUcACGAGCUGCA-UGGCGu--CG- -5'
12852 3' -55.4 NC_003387.1 + 2934 0.73 0.337484
Target:  5'- uGUCGCGGU--UCGGCGccaacCCGCAGCg -3'
miRNA:   3'- cCAGCGUCAcgAGCUGCau---GGCGUCG- -5'
12852 3' -55.4 NC_003387.1 + 3963 0.72 0.35398
Target:  5'- uGGUCGCGcugcaagGCUCGGCGacCCGCGGg -3'
miRNA:   3'- -CCAGCGUca-----CGAGCUGCauGGCGUCg -5'
12852 3' -55.4 NC_003387.1 + 25813 0.72 0.371038
Target:  5'- cGGUgGCGGccUGCUCGGCGgccuggGCgGUGGCc -3'
miRNA:   3'- -CCAgCGUC--ACGAGCUGCa-----UGgCGUCG- -5'
12852 3' -55.4 NC_003387.1 + 25177 0.71 0.406798
Target:  5'- cGG-CGCGGUgGCccCGGCGccgccGCCGCGGCa -3'
miRNA:   3'- -CCaGCGUCA-CGa-GCUGCa----UGGCGUCG- -5'
12852 3' -55.4 NC_003387.1 + 37303 0.7 0.474284
Target:  5'- cGG-CGCGGUcgucgaccgcGC-CGACGUGCCGUGGa -3'
miRNA:   3'- -CCaGCGUCA----------CGaGCUGCAUGGCGUCg -5'
12852 3' -55.4 NC_003387.1 + 48828 0.7 0.464291
Target:  5'- cGGUCGUgcUGCUCGGCGcgaCGCAcgGCg -3'
miRNA:   3'- -CCAGCGucACGAGCUGCaugGCGU--CG- -5'
12852 3' -55.4 NC_003387.1 + 41703 0.72 0.388648
Target:  5'- cGUCGCGGcGC-CGACGaaggcgGCCGgGGCa -3'
miRNA:   3'- cCAGCGUCaCGaGCUGCa-----UGGCgUCG- -5'
12852 3' -55.4 NC_003387.1 + 11431 0.77 0.182699
Target:  5'- uGUCGuCGGUGCUCGugccCGcGCUGCAGCu -3'
miRNA:   3'- cCAGC-GUCACGAGCu---GCaUGGCGUCG- -5'
12852 3' -55.4 NC_003387.1 + 46793 0.7 0.474284
Target:  5'- -aUCGagaaGGUGUUCGACGgcCCGCGcuGCg -3'
miRNA:   3'- ccAGCg---UCACGAGCUGCauGGCGU--CG- -5'
12852 3' -55.4 NC_003387.1 + 21929 0.77 0.192735
Target:  5'- -aUUGUGGUGCUCGGCGgcggggGCgGCGGCa -3'
miRNA:   3'- ccAGCGUCACGAGCUGCa-----UGgCGUCG- -5'
12852 3' -55.4 NC_003387.1 + 49286 0.72 0.379775
Target:  5'- aGGUCGCccaGGUGCUCGcCGaGCaCGCcgagGGCa -3'
miRNA:   3'- -CCAGCG---UCACGAGCuGCaUG-GCG----UCG- -5'
12852 3' -55.4 NC_003387.1 + 43707 0.7 0.474284
Target:  5'- cGG-CGCccgccaGGUGCUCGACG-GCgGCAuGCg -3'
miRNA:   3'- -CCaGCG------UCACGAGCUGCaUGgCGU-CG- -5'
12852 3' -55.4 NC_003387.1 + 51228 0.7 0.494584
Target:  5'- cGGcCGCggccuGGUGCUCGACGUcgaCGCccuGGCc -3'
miRNA:   3'- -CCaGCG-----UCACGAGCUGCAug-GCG---UCG- -5'
12852 3' -55.4 NC_003387.1 + 10610 0.74 0.270271
Target:  5'- cGGUCGCcucGGUcauGCagGACGcgACCGCGGCg -3'
miRNA:   3'- -CCAGCG---UCA---CGagCUGCa-UGGCGUCG- -5'
12852 3' -55.4 NC_003387.1 + 43403 0.73 0.337484
Target:  5'- uGGUCGU-GUGCUCGGagGUcaacGCCGaCAGCa -3'
miRNA:   3'- -CCAGCGuCACGAGCUg-CA----UGGC-GUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.