miRNA display CGI


Results 1 - 20 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12852 3' -55.4 NC_003387.1 + 494 0.68 0.579173
Target:  5'- cGUCGCGaUGCgcgcccgCGugGcgACCGCGGUu -3'
miRNA:   3'- cCAGCGUcACGa------GCugCa-UGGCGUCG- -5'
12852 3' -55.4 NC_003387.1 + 731 0.69 0.525745
Target:  5'- aGGUCGggcaGGUGCgccaggaugcggUCGGCc-ACCGCGGCa -3'
miRNA:   3'- -CCAGCg---UCACG------------AGCUGcaUGGCGUCG- -5'
12852 3' -55.4 NC_003387.1 + 1136 0.69 0.525745
Target:  5'- --aCGguGUGCUCGGCGc-CUGCGuGCa -3'
miRNA:   3'- ccaGCguCACGAGCUGCauGGCGU-CG- -5'
12852 3' -55.4 NC_003387.1 + 1162 0.68 0.6009
Target:  5'- --gCGCGGUGCUUaGCGgcaGCgGUAGCg -3'
miRNA:   3'- ccaGCGUCACGAGcUGCa--UGgCGUCG- -5'
12852 3' -55.4 NC_003387.1 + 1268 0.74 0.270271
Target:  5'- cGGUUGCGGUGCggcugcgCGGCGUucgACCggcGCAGUu -3'
miRNA:   3'- -CCAGCGUCACGa------GCUGCA---UGG---CGUCG- -5'
12852 3' -55.4 NC_003387.1 + 1393 0.69 0.557619
Target:  5'- gGGUCGgGGUcgcGCUCGAaGUugUGCgaGGCg -3'
miRNA:   3'- -CCAGCgUCA---CGAGCUgCAugGCG--UCG- -5'
12852 3' -55.4 NC_003387.1 + 1471 0.73 0.345662
Target:  5'- aGGUCGUcgAGggccaggGCgUCGACGUcgagcaccagGCCGCGGCc -3'
miRNA:   3'- -CCAGCG--UCa------CG-AGCUGCA----------UGGCGUCG- -5'
12852 3' -55.4 NC_003387.1 + 1918 0.67 0.681617
Target:  5'- cGGcCGCGGUGaggUCGAuCGUgcagcgcaugauccgGCCGCGGg -3'
miRNA:   3'- -CCaGCGUCACg--AGCU-GCA---------------UGGCGUCg -5'
12852 3' -55.4 NC_003387.1 + 2567 0.69 0.561913
Target:  5'- -cUCGCcGUGUacgccgacccgucggUCGACGccugGCCGCAGUa -3'
miRNA:   3'- ccAGCGuCACG---------------AGCUGCa---UGGCGUCG- -5'
12852 3' -55.4 NC_003387.1 + 2934 0.73 0.337484
Target:  5'- uGUCGCGGU--UCGGCGccaacCCGCAGCg -3'
miRNA:   3'- cCAGCGUCAcgAGCUGCau---GGCGUCG- -5'
12852 3' -55.4 NC_003387.1 + 3626 0.7 0.504882
Target:  5'- cGUCGaGGUGCUCGAcuuCGUacgccugcgcGCCGCgAGCc -3'
miRNA:   3'- cCAGCgUCACGAGCU---GCA----------UGGCG-UCG- -5'
12852 3' -55.4 NC_003387.1 + 3963 0.72 0.35398
Target:  5'- uGGUCGCGcugcaagGCUCGGCGacCCGCGGg -3'
miRNA:   3'- -CCAGCGUca-----CGAGCUGCauGGCGUCg -5'
12852 3' -55.4 NC_003387.1 + 4004 0.66 0.708518
Target:  5'- cGUCGCggcgcacGGUGCUCGACaa--CGCcaAGCg -3'
miRNA:   3'- cCAGCG-------UCACGAGCUGcaugGCG--UCG- -5'
12852 3' -55.4 NC_003387.1 + 4081 0.66 0.720219
Target:  5'- gGGUucugcCGCA-UGCUCG-CGacCCGCGGCg -3'
miRNA:   3'- -CCA-----GCGUcACGAGCuGCauGGCGUCG- -5'
12852 3' -55.4 NC_003387.1 + 4190 0.68 0.6009
Target:  5'- cGG-CGCGGUGCuUCGGCc-ACCGCgugucGGCc -3'
miRNA:   3'- -CCaGCGUCACG-AGCUGcaUGGCG-----UCG- -5'
12852 3' -55.4 NC_003387.1 + 4729 0.69 0.557619
Target:  5'- cGUCGaAGUGCUCGAagcaccguuugcCGuUGCCGCccAGCu -3'
miRNA:   3'- cCAGCgUCACGAGCU------------GC-AUGGCG--UCG- -5'
12852 3' -55.4 NC_003387.1 + 4769 0.67 0.63257
Target:  5'- -cUCGCGGUGCUucgcggcccacaCGGCGUcgugcccaugccuGCCGCcgaccAGCg -3'
miRNA:   3'- ccAGCGUCACGA------------GCUGCA-------------UGGCG-----UCG- -5'
12852 3' -55.4 NC_003387.1 + 5095 0.7 0.45441
Target:  5'- aGUCGCGGgccauguggGCgagguucugCGGCGagaACCGCAGCg -3'
miRNA:   3'- cCAGCGUCa--------CGa--------GCUGCa--UGGCGUCG- -5'
12852 3' -55.4 NC_003387.1 + 5259 0.68 0.59981
Target:  5'- --cCGCuGUGCg-GGCGUACCugcaggcGCAGCa -3'
miRNA:   3'- ccaGCGuCACGagCUGCAUGG-------CGUCG- -5'
12852 3' -55.4 NC_003387.1 + 6675 0.66 0.739133
Target:  5'- cGGUgcgcUGCAGauccucgacgacGCUCGGCGUcuugcACCGCGGg -3'
miRNA:   3'- -CCA----GCGUCa-----------CGAGCUGCA-----UGGCGUCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.