miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12852 5' -56.1 NC_003387.1 + 52401 0.7 0.410305
Target:  5'- uUGGcGUGCGuGUCGcCGGGCUCGGgcucCACc -3'
miRNA:   3'- -ACC-CGCGC-CAGCaGCUUGAGCUa---GUG- -5'
12852 5' -56.1 NC_003387.1 + 52355 0.66 0.691795
Target:  5'- aUGGGCGCGGaacCGcUCGcGCagaUCGAcCGCg -3'
miRNA:   3'- -ACCCGCGCCa--GC-AGCuUG---AGCUaGUG- -5'
12852 5' -56.1 NC_003387.1 + 50898 0.68 0.572225
Target:  5'- gGGGCGUcGaCGUCGAggGCaUGGUCACg -3'
miRNA:   3'- aCCCGCGcCaGCAGCU--UGaGCUAGUG- -5'
12852 5' -56.1 NC_003387.1 + 49925 0.66 0.665818
Target:  5'- gGGGCaaaCGGguuugcccucgaaCGUCGcgccguGCUCGAUCACg -3'
miRNA:   3'- aCCCGc--GCCa------------GCAGCu-----UGAGCUAGUG- -5'
12852 5' -56.1 NC_003387.1 + 48263 0.67 0.605838
Target:  5'- cGGGCucgGCGGUCGgcucggccuucggcgCGGGCUCGGcgaACg -3'
miRNA:   3'- aCCCG---CGCCAGCa--------------GCUUGAGCUag-UG- -5'
12852 5' -56.1 NC_003387.1 + 46136 0.66 0.681002
Target:  5'- cGGGCgugaggugccGCGGUCGUCGuucuauGugUUGGUgCGCc -3'
miRNA:   3'- aCCCG----------CGCCAGCAGC------UugAGCUA-GUG- -5'
12852 5' -56.1 NC_003387.1 + 45242 0.68 0.55077
Target:  5'- cGGGUGCGGgugCG-CGG-CUCGGugaUCGCc -3'
miRNA:   3'- aCCCGCGCCa--GCaGCUuGAGCU---AGUG- -5'
12852 5' -56.1 NC_003387.1 + 45230 0.67 0.637478
Target:  5'- cGuGGCGUGGUCGgagUCGAuggGCUgGA-CGCg -3'
miRNA:   3'- aC-CCGCGCCAGC---AGCU---UGAgCUaGUG- -5'
12852 5' -56.1 NC_003387.1 + 45144 0.69 0.478009
Target:  5'- cGaGGCGCGG-CGcUCGGAggUGGUCGCg -3'
miRNA:   3'- aC-CCGCGCCaGC-AGCUUgaGCUAGUG- -5'
12852 5' -56.1 NC_003387.1 + 39247 0.68 0.529567
Target:  5'- cGGGCGaGGcCGUCGAGUUCGAccUCGg -3'
miRNA:   3'- aCCCGCgCCaGCAGCUUGAGCU--AGUg -5'
12852 5' -56.1 NC_003387.1 + 37537 0.75 0.234227
Target:  5'- cGGGCGCGGgccuccUCGUCGAucacCUCGcggCGCg -3'
miRNA:   3'- aCCCGCGCC------AGCAGCUu---GAGCua-GUG- -5'
12852 5' -56.1 NC_003387.1 + 37303 0.7 0.410305
Target:  5'- -cGGCGCGGUCGUCGAccgcGC-CGAcgUGCc -3'
miRNA:   3'- acCCGCGCCAGCAGCU----UGaGCUa-GUG- -5'
12852 5' -56.1 NC_003387.1 + 36035 0.73 0.273042
Target:  5'- uUGGGCGUGuucUCGUCGuaaugcAGCUUGAUCGCc -3'
miRNA:   3'- -ACCCGCGCc--AGCAGC------UUGAGCUAGUG- -5'
12852 5' -56.1 NC_003387.1 + 35650 0.79 0.12615
Target:  5'- gGGGCGuuGaCGUCGAcccACUCGAUCGCg -3'
miRNA:   3'- aCCCGCgcCaGCAGCU---UGAGCUAGUG- -5'
12852 5' -56.1 NC_003387.1 + 35456 0.72 0.357249
Target:  5'- cGGG-GUcGUCGUCGAACUgGAUCGa -3'
miRNA:   3'- aCCCgCGcCAGCAGCUUGAgCUAGUg -5'
12852 5' -56.1 NC_003387.1 + 35162 0.67 0.636387
Target:  5'- gGGGCGuuGUCGcccuugucacccuUCGGGC-CGAUCAg -3'
miRNA:   3'- aCCCGCgcCAGC-------------AGCUUGaGCUAGUg -5'
12852 5' -56.1 NC_003387.1 + 33990 0.66 0.65929
Target:  5'- cGGGuCGCGGUCGacgaCGAGCUgccUGcuGUCAUa -3'
miRNA:   3'- aCCC-GCGCCAGCa---GCUUGA---GC--UAGUG- -5'
12852 5' -56.1 NC_003387.1 + 33392 0.67 0.626561
Target:  5'- aGGuucucgcCGCGcUCGUCGcuguACUCGGUCACg -3'
miRNA:   3'- aCCc------GCGCcAGCAGCu---UGAGCUAGUG- -5'
12852 5' -56.1 NC_003387.1 + 32734 0.66 0.652753
Target:  5'- -cGGCGCGGUgGccUCGGcgauucgggcugucaACUCGAUgCGCa -3'
miRNA:   3'- acCCGCGCCAgC--AGCU---------------UGAGCUA-GUG- -5'
12852 5' -56.1 NC_003387.1 + 27929 0.66 0.681003
Target:  5'- gUGGGCGCc-UCGggggGGGCUCGGUCGg -3'
miRNA:   3'- -ACCCGCGccAGCag--CUUGAGCUAGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.