Results 1 - 20 of 39 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12873 | 3' | -55 | NC_003387.1 | + | 38221 | 0.65 | 0.751519 |
Target: 5'- cGG-GUCGAUcgACAgcGCGCCCUuaguggccucgCCGAGc -3' miRNA: 3'- -CCaCAGUUG--UGUuuCGCGGGG-----------GGCUC- -5' |
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12873 | 3' | -55 | NC_003387.1 | + | 49295 | 0.65 | 0.751519 |
Target: 5'- aGGUGcUCGccgaGCACGccGAGgGCacggCCCCGAGc -3' miRNA: 3'- -CCAC-AGU----UGUGU--UUCgCGg---GGGGCUC- -5' |
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12873 | 3' | -55 | NC_003387.1 | + | 394 | 0.65 | 0.751519 |
Target: 5'- --cGUCGaguGCACu---CGCaCCCCCGAGg -3' miRNA: 3'- ccaCAGU---UGUGuuucGCG-GGGGGCUC- -5' |
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12873 | 3' | -55 | NC_003387.1 | + | 9311 | 0.65 | 0.751519 |
Target: 5'- ---aUCAACGCGAcugacaCGgCCCCCGAGg -3' miRNA: 3'- ccacAGUUGUGUUuc----GCgGGGGGCUC- -5' |
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12873 | 3' | -55 | NC_003387.1 | + | 34100 | 0.66 | 0.695128 |
Target: 5'- gGGcGUCGGCAUGacguacgacgaaacGAGCGCCa-CCGAGg -3' miRNA: 3'- -CCaCAGUUGUGU--------------UUCGCGGggGGCUC- -5' |
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12873 | 3' | -55 | NC_003387.1 | + | 41259 | 0.66 | 0.74109 |
Target: 5'- --gGUCGugACGcugaccguGCGCCCCCuCGAc -3' miRNA: 3'- ccaCAGUugUGUuu------CGCGGGGG-GCUc -5' |
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12873 | 3' | -55 | NC_003387.1 | + | 46204 | 0.66 | 0.73055 |
Target: 5'- gGGUGUCA------GGUGCCCaCCCGGc -3' miRNA: 3'- -CCACAGUuguguuUCGCGGG-GGGCUc -5' |
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12873 | 3' | -55 | NC_003387.1 | + | 27831 | 0.66 | 0.709185 |
Target: 5'- cGGUgccGUCggUggACAGGGCGCagccaCCgCCCGAGg -3' miRNA: 3'- -CCA---CAGuuG--UGUUUCGCG-----GG-GGGCUC- -5' |
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12873 | 3' | -55 | NC_003387.1 | + | 37599 | 0.66 | 0.708108 |
Target: 5'- cGG-GUCGcGCACAgggucAGGCGCCCCguugacgCCGAu -3' miRNA: 3'- -CCaCAGU-UGUGU-----UUCGCGGGG-------GGCUc -5' |
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12873 | 3' | -55 | NC_003387.1 | + | 49482 | 0.67 | 0.643625 |
Target: 5'- uGGUuUCGGC-CGGuGCGCCCgCCCGGc -3' miRNA: 3'- -CCAcAGUUGuGUUuCGCGGG-GGGCUc -5' |
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12873 | 3' | -55 | NC_003387.1 | + | 227 | 0.67 | 0.643625 |
Target: 5'- aGG-GUUGACAU---GCGCgCCCCCGAc -3' miRNA: 3'- -CCaCAGUUGUGuuuCGCG-GGGGGCUc -5' |
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12873 | 3' | -55 | NC_003387.1 | + | 29839 | 0.67 | 0.642523 |
Target: 5'- ---aUCugcuACACGAGGCGCCCCUgucgauucgucggCGAGg -3' miRNA: 3'- ccacAGu---UGUGUUUCGCGGGGG-------------GCUC- -5' |
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12873 | 3' | -55 | NC_003387.1 | + | 40516 | 0.67 | 0.676596 |
Target: 5'- cGGUGgccCGGCACcgagcAGCGaCCUgCCCGAGg -3' miRNA: 3'- -CCACa--GUUGUGuu---UCGC-GGG-GGGCUC- -5' |
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12873 | 3' | -55 | NC_003387.1 | + | 4416 | 0.67 | 0.665633 |
Target: 5'- --cGUCGACgccgagcuggGCAAGGCGUUCgCCGAGc -3' miRNA: 3'- ccaCAGUUG----------UGUUUCGCGGGgGGCUC- -5' |
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12873 | 3' | -55 | NC_003387.1 | + | 1555 | 0.67 | 0.643625 |
Target: 5'- aGGcGUacguGCAUAccGGCGCCCCCCGu- -3' miRNA: 3'- -CCaCAgu--UGUGUu-UCGCGGGGGGCuc -5' |
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12873 | 3' | -55 | NC_003387.1 | + | 5293 | 0.67 | 0.665633 |
Target: 5'- gGGUGUUGuGCAUGAGGCcCUCCUCGGGc -3' miRNA: 3'- -CCACAGU-UGUGUUUCGcGGGGGGCUC- -5' |
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12873 | 3' | -55 | NC_003387.1 | + | 27131 | 0.67 | 0.687516 |
Target: 5'- cGG-GUCGAgGCc--GUGCCCgCCGGGg -3' miRNA: 3'- -CCaCAGUUgUGuuuCGCGGGgGGCUC- -5' |
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12873 | 3' | -55 | NC_003387.1 | + | 24774 | 0.68 | 0.6326 |
Target: 5'- -----gAGCACGccGAGCGCCCCgaCCGAGc -3' miRNA: 3'- ccacagUUGUGU--UUCGCGGGG--GGCUC- -5' |
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12873 | 3' | -55 | NC_003387.1 | + | 23654 | 0.68 | 0.574387 |
Target: 5'- --cGUCAACAggcccuagaaacgcCGAAaCGCCCCCCGGc -3' miRNA: 3'- ccaCAGUUGU--------------GUUUcGCGGGGGGCUc -5' |
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12873 | 3' | -55 | NC_003387.1 | + | 37015 | 0.68 | 0.588591 |
Target: 5'- aGGU-UCAGCACAuuGCugGCCUCgCCGAGc -3' miRNA: 3'- -CCAcAGUUGUGUuuCG--CGGGG-GGCUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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