miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12873 3' -55 NC_003387.1 + 227 0.67 0.643625
Target:  5'- aGG-GUUGACAU---GCGCgCCCCCGAc -3'
miRNA:   3'- -CCaCAGUUGUGuuuCGCG-GGGGGCUc -5'
12873 3' -55 NC_003387.1 + 394 0.65 0.751519
Target:  5'- --cGUCGaguGCACu---CGCaCCCCCGAGg -3'
miRNA:   3'- ccaCAGU---UGUGuuucGCG-GGGGGCUC- -5'
12873 3' -55 NC_003387.1 + 1139 0.71 0.421989
Target:  5'- cGGUGUCGACguccugauuuucgACGAGGCGCagaucCUCaCCGAGa -3'
miRNA:   3'- -CCACAGUUG-------------UGUUUCGCG-----GGG-GGCUC- -5'
12873 3' -55 NC_003387.1 + 1555 0.67 0.643625
Target:  5'- aGGcGUacguGCAUAccGGCGCCCCCCGu- -3'
miRNA:   3'- -CCaCAgu--UGUGUu-UCGCGGGGGGCuc -5'
12873 3' -55 NC_003387.1 + 2167 1.1 0.000873
Target:  5'- aGGUGUCAACACAAAGCGCCCCCCGAGc -3'
miRNA:   3'- -CCACAGUUGUGUUUCGCGGGGGGCUC- -5'
12873 3' -55 NC_003387.1 + 2757 0.76 0.211425
Target:  5'- aGGUGUCAACACAAA-CGCCCC--GAGu -3'
miRNA:   3'- -CCACAGUUGUGUUUcGCGGGGggCUC- -5'
12873 3' -55 NC_003387.1 + 4416 0.67 0.665633
Target:  5'- --cGUCGACgccgagcuggGCAAGGCGUUCgCCGAGc -3'
miRNA:   3'- ccaCAGUUG----------UGUUUCGCGGGgGGCUC- -5'
12873 3' -55 NC_003387.1 + 5293 0.67 0.665633
Target:  5'- gGGUGUUGuGCAUGAGGCcCUCCUCGGGc -3'
miRNA:   3'- -CCACAGU-UGUGUUUCGcGGGGGGCUC- -5'
12873 3' -55 NC_003387.1 + 6340 0.72 0.385954
Target:  5'- -cUGUCAACACGcuGCGCCCaCCGuGu -3'
miRNA:   3'- ccACAGUUGUGUuuCGCGGGgGGCuC- -5'
12873 3' -55 NC_003387.1 + 7568 0.71 0.452033
Target:  5'- --cGUCAucacugaguACACGAuGGCGaCCCCCGAGa -3'
miRNA:   3'- ccaCAGU---------UGUGUU-UCGCgGGGGGCUC- -5'
12873 3' -55 NC_003387.1 + 7983 0.7 0.513278
Target:  5'- gGGUG-CuGCGCuucGGCGCCCCggCCGGGc -3'
miRNA:   3'- -CCACaGuUGUGuu-UCGCGGGG--GGCUC- -5'
12873 3' -55 NC_003387.1 + 9311 0.65 0.751519
Target:  5'- ---aUCAACGCGAcugacaCGgCCCCCGAGg -3'
miRNA:   3'- ccacAGUUGUGUUuc----GCgGGGGGCUC- -5'
12873 3' -55 NC_003387.1 + 9372 0.8 0.125754
Target:  5'- cGGUGgCGGC-CGAGGCGaCCCCCGAGg -3'
miRNA:   3'- -CCACaGUUGuGUUUCGCgGGGGGCUC- -5'
12873 3' -55 NC_003387.1 + 22852 0.76 0.217104
Target:  5'- --cGUCAACACgAAAGCGCCCUcgCCGAc -3'
miRNA:   3'- ccaCAGUUGUG-UUUCGCGGGG--GGCUc -5'
12873 3' -55 NC_003387.1 + 23654 0.68 0.574387
Target:  5'- --cGUCAACAggcccuagaaacgcCGAAaCGCCCCCCGGc -3'
miRNA:   3'- ccaCAGUUGU--------------GUUUcGCGGGGGGCUc -5'
12873 3' -55 NC_003387.1 + 24774 0.68 0.6326
Target:  5'- -----gAGCACGccGAGCGCCCCgaCCGAGc -3'
miRNA:   3'- ccacagUUGUGU--UUCGCGGGG--GGCUC- -5'
12873 3' -55 NC_003387.1 + 26486 0.69 0.534457
Target:  5'- cGGUGUugCGGCuaaGAAuGCGCUgCCCGAGg -3'
miRNA:   3'- -CCACA--GUUGug-UUU-CGCGGgGGGCUC- -5'
12873 3' -55 NC_003387.1 + 27131 0.67 0.687516
Target:  5'- cGG-GUCGAgGCc--GUGCCCgCCGGGg -3'
miRNA:   3'- -CCaCAGUUgUGuuuCGCGGGgGGCUC- -5'
12873 3' -55 NC_003387.1 + 27831 0.66 0.709185
Target:  5'- cGGUgccGUCggUggACAGGGCGCagccaCCgCCCGAGg -3'
miRNA:   3'- -CCA---CAGuuG--UGUUUCGCG-----GG-GGGCUC- -5'
12873 3' -55 NC_003387.1 + 28444 0.76 0.222326
Target:  5'- uGGUGU--ACACGAucgacgagcuggcGGCGgCCCCCGAGg -3'
miRNA:   3'- -CCACAguUGUGUU-------------UCGCgGGGGGCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.