miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12873 3' -55 NC_003387.1 + 2167 1.1 0.000873
Target:  5'- aGGUGUCAACACAAAGCGCCCCCCGAGc -3'
miRNA:   3'- -CCACAGUUGUGUUUCGCGGGGGGCUC- -5'
12873 3' -55 NC_003387.1 + 9372 0.8 0.125754
Target:  5'- cGGUGgCGGC-CGAGGCGaCCCCCGAGg -3'
miRNA:   3'- -CCACaGUUGuGUUUCGCgGGGGGCUC- -5'
12873 3' -55 NC_003387.1 + 50958 0.78 0.165869
Target:  5'- --cGcCAGCGCGAAGCG-CCCCCGAGc -3'
miRNA:   3'- ccaCaGUUGUGUUUCGCgGGGGGCUC- -5'
12873 3' -55 NC_003387.1 + 2757 0.76 0.211425
Target:  5'- aGGUGUCAACACAAA-CGCCCC--GAGu -3'
miRNA:   3'- -CCACAGUUGUGUUUcGCGGGGggCUC- -5'
12873 3' -55 NC_003387.1 + 22852 0.76 0.217104
Target:  5'- --cGUCAACACgAAAGCGCCCUcgCCGAc -3'
miRNA:   3'- ccaCAGUUGUG-UUUCGCGGGG--GGCUc -5'
12873 3' -55 NC_003387.1 + 28444 0.76 0.222326
Target:  5'- uGGUGU--ACACGAucgacgagcuggcGGCGgCCCCCGAGg -3'
miRNA:   3'- -CCACAguUGUGUU-------------UCGCgGGGGGCUC- -5'
12873 3' -55 NC_003387.1 + 29027 0.74 0.303285
Target:  5'- --aGUCAGCAaacAGCGCCCCUCGGc -3'
miRNA:   3'- ccaCAGUUGUguuUCGCGGGGGGCUc -5'
12873 3' -55 NC_003387.1 + 31018 0.72 0.377047
Target:  5'- --gGUCGGCGCGGGccGCGCUCgCCGAGg -3'
miRNA:   3'- ccaCAGUUGUGUUU--CGCGGGgGGCUC- -5'
12873 3' -55 NC_003387.1 + 6340 0.72 0.385954
Target:  5'- -cUGUCAACACGcuGCGCCCaCCGuGu -3'
miRNA:   3'- ccACAGUUGUGUuuCGCGGGgGGCuC- -5'
12873 3' -55 NC_003387.1 + 1139 0.71 0.421989
Target:  5'- cGGUGUCGACguccugauuuucgACGAGGCGCagaucCUCaCCGAGa -3'
miRNA:   3'- -CCACAGUUG-------------UGUUUCGCG-----GGG-GGCUC- -5'
12873 3' -55 NC_003387.1 + 7568 0.71 0.452033
Target:  5'- --cGUCAucacugaguACACGAuGGCGaCCCCCGAGa -3'
miRNA:   3'- ccaCAGU---------UGUGUU-UCGCgGGGGGCUC- -5'
12873 3' -55 NC_003387.1 + 32854 0.7 0.502818
Target:  5'- cGGUGUCuu-GCAGGGCGCCCagcgCCGc- -3'
miRNA:   3'- -CCACAGuugUGUUUCGCGGGg---GGCuc -5'
12873 3' -55 NC_003387.1 + 7983 0.7 0.513278
Target:  5'- gGGUG-CuGCGCuucGGCGCCCCggCCGGGc -3'
miRNA:   3'- -CCACaGuUGUGuu-UCGCGGGG--GGCUC- -5'
12873 3' -55 NC_003387.1 + 50308 0.69 0.534457
Target:  5'- uGGgccGUCAACGCGAuGCGCCCCg---- -3'
miRNA:   3'- -CCa--CAGUUGUGUUuCGCGGGGggcuc -5'
12873 3' -55 NC_003387.1 + 26486 0.69 0.534457
Target:  5'- cGGUGUugCGGCuaaGAAuGCGCUgCCCGAGg -3'
miRNA:   3'- -CCACA--GUUGug-UUU-CGCGGgGGGCUC- -5'
12873 3' -55 NC_003387.1 + 35598 0.69 0.545162
Target:  5'- --gGUCGACACAgcGAuCGCCuacggCCCCGAGg -3'
miRNA:   3'- ccaCAGUUGUGU--UUcGCGG-----GGGGCUC- -5'
12873 3' -55 NC_003387.1 + 34884 0.69 0.545162
Target:  5'- aGGUG-CGGCGCAagagAAGUGCCCgaCGGGa -3'
miRNA:   3'- -CCACaGUUGUGU----UUCGCGGGggGCUC- -5'
12873 3' -55 NC_003387.1 + 30047 0.69 0.555936
Target:  5'- --cGUCGACACcgcccacGAGCGCgCCCUGAc -3'
miRNA:   3'- ccaCAGUUGUGu------UUCGCGgGGGGCUc -5'
12873 3' -55 NC_003387.1 + 23654 0.68 0.574387
Target:  5'- --cGUCAACAggcccuagaaacgcCGAAaCGCCCCCCGGc -3'
miRNA:   3'- ccaCAGUUGU--------------GUUUcGCGGGGGGCUc -5'
12873 3' -55 NC_003387.1 + 37015 0.68 0.588591
Target:  5'- aGGU-UCAGCACAuuGCugGCCUCgCCGAGc -3'
miRNA:   3'- -CCAcAGUUGUGUuuCG--CGGGG-GGCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.