miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12873 3' -55 NC_003387.1 + 29027 0.74 0.303285
Target:  5'- --aGUCAGCAaacAGCGCCCCUCGGc -3'
miRNA:   3'- ccaCAGUUGUguuUCGCGGGGGGCUc -5'
12873 3' -55 NC_003387.1 + 41259 0.66 0.74109
Target:  5'- --gGUCGugACGcugaccguGCGCCCCCuCGAc -3'
miRNA:   3'- ccaCAGUugUGUuu------CGCGGGGG-GCUc -5'
12873 3' -55 NC_003387.1 + 49295 0.65 0.751519
Target:  5'- aGGUGcUCGccgaGCACGccGAGgGCacggCCCCGAGc -3'
miRNA:   3'- -CCAC-AGU----UGUGU--UUCgCGg---GGGGCUC- -5'
12873 3' -55 NC_003387.1 + 9311 0.65 0.751519
Target:  5'- ---aUCAACGCGAcugacaCGgCCCCCGAGg -3'
miRNA:   3'- ccacAGUUGUGUUuc----GCgGGGGGCUC- -5'
12873 3' -55 NC_003387.1 + 26486 0.69 0.534457
Target:  5'- cGGUGUugCGGCuaaGAAuGCGCUgCCCGAGg -3'
miRNA:   3'- -CCACA--GUUGug-UUU-CGCGGgGGGCUC- -5'
12873 3' -55 NC_003387.1 + 35598 0.69 0.545162
Target:  5'- --gGUCGACACAgcGAuCGCCuacggCCCCGAGg -3'
miRNA:   3'- ccaCAGUUGUGU--UUcGCGG-----GGGGCUC- -5'
12873 3' -55 NC_003387.1 + 24774 0.68 0.6326
Target:  5'- -----gAGCACGccGAGCGCCCCgaCCGAGc -3'
miRNA:   3'- ccacagUUGUGU--UUCGCGGGG--GGCUC- -5'
12873 3' -55 NC_003387.1 + 9372 0.8 0.125754
Target:  5'- cGGUGgCGGC-CGAGGCGaCCCCCGAGg -3'
miRNA:   3'- -CCACaGUUGuGUUUCGCgGGGGGCUC- -5'
12873 3' -55 NC_003387.1 + 50958 0.78 0.165869
Target:  5'- --cGcCAGCGCGAAGCG-CCCCCGAGc -3'
miRNA:   3'- ccaCaGUUGUGUUUCGCgGGGGGCUC- -5'
12873 3' -55 NC_003387.1 + 34100 0.66 0.695128
Target:  5'- gGGcGUCGGCAUGacguacgacgaaacGAGCGCCa-CCGAGg -3'
miRNA:   3'- -CCaCAGUUGUGU--------------UUCGCGGggGGCUC- -5'
12873 3' -55 NC_003387.1 + 49482 0.67 0.643625
Target:  5'- uGGUuUCGGC-CGGuGCGCCCgCCCGGc -3'
miRNA:   3'- -CCAcAGUUGuGUUuCGCGGG-GGGCUc -5'
12873 3' -55 NC_003387.1 + 227 0.67 0.643625
Target:  5'- aGG-GUUGACAU---GCGCgCCCCCGAc -3'
miRNA:   3'- -CCaCAGUUGUGuuuCGCG-GGGGGCUc -5'
12873 3' -55 NC_003387.1 + 1139 0.71 0.421989
Target:  5'- cGGUGUCGACguccugauuuucgACGAGGCGCagaucCUCaCCGAGa -3'
miRNA:   3'- -CCACAGUUG-------------UGUUUCGCG-----GGG-GGCUC- -5'
12873 3' -55 NC_003387.1 + 4416 0.67 0.665633
Target:  5'- --cGUCGACgccgagcuggGCAAGGCGUUCgCCGAGc -3'
miRNA:   3'- ccaCAGUUG----------UGUUUCGCGGGgGGCUC- -5'
12873 3' -55 NC_003387.1 + 7568 0.71 0.452033
Target:  5'- --cGUCAucacugaguACACGAuGGCGaCCCCCGAGa -3'
miRNA:   3'- ccaCAGU---------UGUGUU-UCGCgGGGGGCUC- -5'
12873 3' -55 NC_003387.1 + 29839 0.67 0.642523
Target:  5'- ---aUCugcuACACGAGGCGCCCCUgucgauucgucggCGAGg -3'
miRNA:   3'- ccacAGu---UGUGUUUCGCGGGGG-------------GCUC- -5'
12873 3' -55 NC_003387.1 + 40516 0.67 0.676596
Target:  5'- cGGUGgccCGGCACcgagcAGCGaCCUgCCCGAGg -3'
miRNA:   3'- -CCACa--GUUGUGuu---UCGC-GGG-GGGCUC- -5'
12873 3' -55 NC_003387.1 + 394 0.65 0.751519
Target:  5'- --cGUCGaguGCACu---CGCaCCCCCGAGg -3'
miRNA:   3'- ccaCAGU---UGUGuuucGCG-GGGGGCUC- -5'
12873 3' -55 NC_003387.1 + 50308 0.69 0.534457
Target:  5'- uGGgccGUCAACGCGAuGCGCCCCg---- -3'
miRNA:   3'- -CCa--CAGUUGUGUUuCGCGGGGggcuc -5'
12873 3' -55 NC_003387.1 + 30047 0.69 0.555936
Target:  5'- --cGUCGACACcgcccacGAGCGCgCCCUGAc -3'
miRNA:   3'- ccaCAGUUGUGu------UUCGCGgGGGGCUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.