miRNA display CGI


Results 1 - 20 of 175 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12876 5' -52.8 NC_003387.1 + 37752 0.66 0.850082
Target:  5'- gUGCGCGGCGGGaucuugccguCGAAAcCGauaCCaCCGGg -3'
miRNA:   3'- -ACGUGUCGUUU----------GCUUUuGCg--GG-GGCC- -5'
12876 5' -52.8 NC_003387.1 + 23727 0.66 0.838615
Target:  5'- gGCGCAGCGcauugcugcagcuuAGCGGGuGCGCUCgaguuuuugCCGGc -3'
miRNA:   3'- aCGUGUCGU--------------UUGCUUuUGCGGG---------GGCC- -5'
12876 5' -52.8 NC_003387.1 + 23408 0.66 0.832282
Target:  5'- aGCGCGGCcuGGCGcucgUGCCCgCGGu -3'
miRNA:   3'- aCGUGUCGu-UUGCuuuuGCGGGgGCC- -5'
12876 5' -52.8 NC_003387.1 + 3970 0.66 0.832282
Target:  5'- aGCACcGCGuGCGu-GACGUUCCCaGGa -3'
miRNA:   3'- aCGUGuCGUuUGCuuUUGCGGGGG-CC- -5'
12876 5' -52.8 NC_003387.1 + 15385 0.66 0.832282
Target:  5'- aGCGCAGCccgcGGCGggGGCucGUCCaCGGc -3'
miRNA:   3'- aCGUGUCGu---UUGCuuUUG--CGGGgGCC- -5'
12876 5' -52.8 NC_003387.1 + 3150 0.66 0.823049
Target:  5'- cGCcCGGC-AGCGG--GCGCaCCUCGGc -3'
miRNA:   3'- aCGuGUCGuUUGCUuuUGCG-GGGGCC- -5'
12876 5' -52.8 NC_003387.1 + 2909 0.66 0.823049
Target:  5'- gGCGCGGCAGgccGCGGGcGAgGCUCUCGu -3'
miRNA:   3'- aCGUGUCGUU---UGCUU-UUgCGGGGGCc -5'
12876 5' -52.8 NC_003387.1 + 51821 0.66 0.813608
Target:  5'- aUGCACAGC--GCGAacacGAGCGCgCCgagcaGGu -3'
miRNA:   3'- -ACGUGUCGuuUGCU----UUUGCGgGGg----CC- -5'
12876 5' -52.8 NC_003387.1 + 32733 0.66 0.813608
Target:  5'- gGCGCcGCG---GAGAACGgCCCCGa -3'
miRNA:   3'- aCGUGuCGUuugCUUUUGCgGGGGCc -5'
12876 5' -52.8 NC_003387.1 + 6831 0.66 0.841296
Target:  5'- cGgGCGGCAGGuCGAu--CGCCCgCuCGGc -3'
miRNA:   3'- aCgUGUCGUUU-GCUuuuGCGGG-G-GCC- -5'
12876 5' -52.8 NC_003387.1 + 12334 0.66 0.841296
Target:  5'- cGUGCAGCucgccgccGACGucGAgGCCCuuGGc -3'
miRNA:   3'- aCGUGUCGu-------UUGCuuUUgCGGGggCC- -5'
12876 5' -52.8 NC_003387.1 + 20429 0.66 0.841296
Target:  5'- uUGUGCAGCcgcCGGugcuccucGCGCCCCCa- -3'
miRNA:   3'- -ACGUGUCGuuuGCUuu------UGCGGGGGcc -5'
12876 5' -52.8 NC_003387.1 + 34138 0.66 0.850082
Target:  5'- gUGCGCgaacucgacgAGCAccagGGCGu---CGCCCUCGGc -3'
miRNA:   3'- -ACGUG----------UCGU----UUGCuuuuGCGGGGGCC- -5'
12876 5' -52.8 NC_003387.1 + 22268 0.66 0.850082
Target:  5'- gUGCACAGCAG-----GGCGCCgugCUCGGc -3'
miRNA:   3'- -ACGUGUCGUUugcuuUUGCGG---GGGCC- -5'
12876 5' -52.8 NC_003387.1 + 15793 0.66 0.850082
Target:  5'- cGUgaaACAGCAccAGCGggGugccgcuguCGCCgCCGGu -3'
miRNA:   3'- aCG---UGUCGU--UUGCuuUu--------GCGGgGGCC- -5'
12876 5' -52.8 NC_003387.1 + 15422 0.66 0.850082
Target:  5'- gGCGCGGUcGACGAccgcgccgacGAGCGCgCCaGGc -3'
miRNA:   3'- aCGUGUCGuUUGCU----------UUUGCGgGGgCC- -5'
12876 5' -52.8 NC_003387.1 + 13146 0.66 0.850082
Target:  5'- gUGCGCAGC--GCGAAcAgGCCgUCGa -3'
miRNA:   3'- -ACGUGUCGuuUGCUUuUgCGGgGGCc -5'
12876 5' -52.8 NC_003387.1 + 47478 0.66 0.844838
Target:  5'- cGCACAGCGGGCGAguuguucagcaugucGAGCaGCaucgugcgguaCCCGa -3'
miRNA:   3'- aCGUGUCGUUUGCU---------------UUUG-CGg----------GGGCc -5'
12876 5' -52.8 NC_003387.1 + 48887 0.66 0.841296
Target:  5'- uUGCugGGCcaccGCGAAAuCGCCUgCGa -3'
miRNA:   3'- -ACGugUCGuu--UGCUUUuGCGGGgGCc -5'
12876 5' -52.8 NC_003387.1 + 34957 0.66 0.841296
Target:  5'- cGUuuCGGCcgacgccgugauGAGCGguGugGCCCCUGGc -3'
miRNA:   3'- aCGu-GUCG------------UUUGCuuUugCGGGGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.