Results 1 - 20 of 175 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12876 | 5' | -52.8 | NC_003387.1 | + | 1729 | 1.1 | 0.001428 |
Target: 5'- gUGCACAGCAAACGAAAACGCCCCCGGc -3' miRNA: 3'- -ACGUGUCGUUUGCUUUUGCGGGGGCC- -5' |
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12876 | 5' | -52.8 | NC_003387.1 | + | 22019 | 0.83 | 0.111796 |
Target: 5'- aGCGCcccgcaGGCGcACGAAAACGCCCCCGc -3' miRNA: 3'- aCGUG------UCGUuUGCUUUUGCGGGGGCc -5' |
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12876 | 5' | -52.8 | NC_003387.1 | + | 7841 | 0.82 | 0.118389 |
Target: 5'- gGCGC-GCAGGCGGAaucgccGACGCCCCCGa -3' miRNA: 3'- aCGUGuCGUUUGCUU------UUGCGGGGGCc -5' |
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12876 | 5' | -52.8 | NC_003387.1 | + | 23815 | 0.82 | 0.125342 |
Target: 5'- cGCGCAGCAGAuacgUGAGGGCGCCgCgCCGGg -3' miRNA: 3'- aCGUGUCGUUU----GCUUUUGCGG-G-GGCC- -5' |
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12876 | 5' | -52.8 | NC_003387.1 | + | 32543 | 0.79 | 0.195932 |
Target: 5'- gGCGCAGCAGcgcaucaaccGCGcccucGACGCCCUCGGg -3' miRNA: 3'- aCGUGUCGUU----------UGCuu---UUGCGGGGGCC- -5' |
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12876 | 5' | -52.8 | NC_003387.1 | + | 30651 | 0.78 | 0.224279 |
Target: 5'- aGCGCcugagAGCcAACGAGaAACGCCCCCGa -3' miRNA: 3'- aCGUG-----UCGuUUGCUU-UUGCGGGGGCc -5' |
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12876 | 5' | -52.8 | NC_003387.1 | + | 21394 | 0.78 | 0.242911 |
Target: 5'- cGCGCuaauGCcuuGGACGccAACGCCCCCGGc -3' miRNA: 3'- aCGUGu---CG---UUUGCuuUUGCGGGGGCC- -5' |
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12876 | 5' | -52.8 | NC_003387.1 | + | 41730 | 0.77 | 0.249401 |
Target: 5'- gGCACGGC---CGAGGACGUCaCCCGGc -3' miRNA: 3'- aCGUGUCGuuuGCUUUUGCGG-GGGCC- -5' |
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12876 | 5' | -52.8 | NC_003387.1 | + | 39277 | 0.77 | 0.256035 |
Target: 5'- aGCugGGCAagcugcucGACGAcgGCaaGCCCCCGGc -3' miRNA: 3'- aCGugUCGU--------UUGCUuuUG--CGGGGGCC- -5' |
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12876 | 5' | -52.8 | NC_003387.1 | + | 49798 | 0.76 | 0.291381 |
Target: 5'- gGCGCAGUucGACGAGAGCcucGCCCgCGGc -3' miRNA: 3'- aCGUGUCGu-UUGCUUUUG---CGGGgGCC- -5' |
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12876 | 5' | -52.8 | NC_003387.1 | + | 37204 | 0.76 | 0.298136 |
Target: 5'- cGUGCAGCAGGCGGugcucauAAACGCCgCCGu -3' miRNA: 3'- aCGUGUCGUUUGCU-------UUUGCGGgGGCc -5' |
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12876 | 5' | -52.8 | NC_003387.1 | + | 13949 | 0.76 | 0.306555 |
Target: 5'- cUGUACAGCGugUGAuuGcCGCCCCgCGGg -3' miRNA: 3'- -ACGUGUCGUuuGCUuuU-GCGGGG-GCC- -5' |
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12876 | 5' | -52.8 | NC_003387.1 | + | 50958 | 0.75 | 0.330435 |
Target: 5'- cGC-CAGC--GCG-AAGCGCCCCCGa -3' miRNA: 3'- aCGuGUCGuuUGCuUUUGCGGGGGCc -5' |
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12876 | 5' | -52.8 | NC_003387.1 | + | 17893 | 0.75 | 0.337861 |
Target: 5'- cGCGCGGgCcgucGACGAAcauucucGACGCCCCCGa -3' miRNA: 3'- aCGUGUC-Gu---UUGCUU-------UUGCGGGGGCc -5' |
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12876 | 5' | -52.8 | NC_003387.1 | + | 49917 | 0.75 | 0.355658 |
Target: 5'- cGCACaacggGGCAAACGGGuuUGCCCUCGa -3' miRNA: 3'- aCGUG-----UCGUUUGCUUuuGCGGGGGCc -5' |
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12876 | 5' | -52.8 | NC_003387.1 | + | 6949 | 0.74 | 0.372319 |
Target: 5'- cUGCGCAGCGgcgggcaGGCGccacagcGCGCCCUCGGc -3' miRNA: 3'- -ACGUGUCGU-------UUGCuuu----UGCGGGGGCC- -5' |
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12876 | 5' | -52.8 | NC_003387.1 | + | 45632 | 0.74 | 0.373211 |
Target: 5'- cGUACGGCGAgGCGAAGAUcgGCCgCCUGGc -3' miRNA: 3'- aCGUGUCGUU-UGCUUUUG--CGG-GGGCC- -5' |
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12876 | 5' | -52.8 | NC_003387.1 | + | 39051 | 0.74 | 0.382206 |
Target: 5'- cGaCAUAGCGu-CGAcgGCGCCCUCGGc -3' miRNA: 3'- aC-GUGUCGUuuGCUuuUGCGGGGGCC- -5' |
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12876 | 5' | -52.8 | NC_003387.1 | + | 29666 | 0.74 | 0.382206 |
Target: 5'- cGCACGGCGuaguGCGuGAucggcACGCCgCCGGg -3' miRNA: 3'- aCGUGUCGUu---UGCuUU-----UGCGGgGGCC- -5' |
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12876 | 5' | -52.8 | NC_003387.1 | + | 38021 | 0.74 | 0.382206 |
Target: 5'- gUGCACcGCAAcggaucgcgGCGAcgGCGCCCCgauCGGg -3' miRNA: 3'- -ACGUGuCGUU---------UGCUuuUGCGGGG---GCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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