miRNA display CGI


Results 1 - 20 of 175 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12876 5' -52.8 NC_003387.1 + 1299 0.71 0.554462
Target:  5'- gGCGCAGUucgAGGCGGcgccgcAGGCGCUCgCCGGu -3'
miRNA:   3'- aCGUGUCG---UUUGCU------UUUGCGGG-GGCC- -5'
12876 5' -52.8 NC_003387.1 + 1333 0.66 0.813608
Target:  5'- gGUACGucgagauuuccGCcGACGAGGACGCcgaCCCCGa -3'
miRNA:   3'- aCGUGU-----------CGuUUGCUUUUGCG---GGGGCc -5'
12876 5' -52.8 NC_003387.1 + 1474 0.67 0.784143
Target:  5'- aGCGCgaGGCGAugGGcauAugGCCCaaGGu -3'
miRNA:   3'- aCGUG--UCGUUugCUu--UugCGGGggCC- -5'
12876 5' -52.8 NC_003387.1 + 1567 0.67 0.773979
Target:  5'- aGgACGGCgAAGCGccuAACGCCCUggCGGu -3'
miRNA:   3'- aCgUGUCG-UUUGCuu-UUGCGGGG--GCC- -5'
12876 5' -52.8 NC_003387.1 + 1715 0.71 0.554462
Target:  5'- cGCugAGCGGGcCGGGcGGCGCaUCCCGGu -3'
miRNA:   3'- aCGugUCGUUU-GCUU-UUGCG-GGGGCC- -5'
12876 5' -52.8 NC_003387.1 + 1729 1.1 0.001428
Target:  5'- gUGCACAGCAAACGAAAACGCCCCCGGc -3'
miRNA:   3'- -ACGUGUCGUUUGCUUUUGCGGGGGCC- -5'
12876 5' -52.8 NC_003387.1 + 1885 0.68 0.72003
Target:  5'- cGCAUGGCGAucagcccGCGcugaauGACGCCCUCGc -3'
miRNA:   3'- aCGUGUCGUU-------UGCuu----UUGCGGGGGCc -5'
12876 5' -52.8 NC_003387.1 + 2909 0.66 0.823049
Target:  5'- gGCGCGGCAGgccGCGGGcGAgGCUCUCGu -3'
miRNA:   3'- aCGUGUCGUU---UGCUU-UUgCGGGGGCc -5'
12876 5' -52.8 NC_003387.1 + 3150 0.66 0.823049
Target:  5'- cGCcCGGC-AGCGG--GCGCaCCUCGGc -3'
miRNA:   3'- aCGuGUCGuUUGCUuuUGCG-GGGGCC- -5'
12876 5' -52.8 NC_003387.1 + 3843 0.7 0.598792
Target:  5'- gGCGCGGUAGGCG---GCGCCgacgaUCCGGc -3'
miRNA:   3'- aCGUGUCGUUUGCuuuUGCGG-----GGGCC- -5'
12876 5' -52.8 NC_003387.1 + 3970 0.66 0.832282
Target:  5'- aGCACcGCGuGCGu-GACGUUCCCaGGa -3'
miRNA:   3'- aCGUGuCGUuUGCuuUUGCGGGGG-CC- -5'
12876 5' -52.8 NC_003387.1 + 4209 0.67 0.783134
Target:  5'- cGUGCAGCAGugGGAGcaggauuaccugcAgGCCCgCCGc -3'
miRNA:   3'- aCGUGUCGUUugCUUU-------------UgCGGG-GGCc -5'
12876 5' -52.8 NC_003387.1 + 4608 0.74 0.410041
Target:  5'- cGCGCAGCAAGCcAAGGCGgCCaaGGc -3'
miRNA:   3'- aCGUGUCGUUUGcUUUUGCgGGggCC- -5'
12876 5' -52.8 NC_003387.1 + 4634 0.7 0.632379
Target:  5'- gGCGCAGCGgcAGCGccacccgucGAGGCGCUUCgGGg -3'
miRNA:   3'- aCGUGUCGU--UUGC---------UUUUGCGGGGgCC- -5'
12876 5' -52.8 NC_003387.1 + 5017 0.68 0.699245
Target:  5'- aGCACGGCAGgcucACGAGGGCGgCgCUGc -3'
miRNA:   3'- aCGUGUCGUU----UGCUUUUGCgGgGGCc -5'
12876 5' -52.8 NC_003387.1 + 5281 0.68 0.721116
Target:  5'- gGCGCAGCAAuaGAuuucACGCCcaaCCUGGg -3'
miRNA:   3'- aCGUGUCGUUugCUuu--UGCGG---GGGCC- -5'
12876 5' -52.8 NC_003387.1 + 5685 0.7 0.58653
Target:  5'- cUGCGCAGCAAggugGCGGcggucaaGGGCGUgCCCGc -3'
miRNA:   3'- -ACGUGUCGUU----UGCU-------UUUGCGgGGGCc -5'
12876 5' -52.8 NC_003387.1 + 5845 0.73 0.459117
Target:  5'- cUGCGCcGCAggUGggGGCGCCgcaaccguCCUGGu -3'
miRNA:   3'- -ACGUGuCGUuuGCuuUUGCGG--------GGGCC- -5'
12876 5' -52.8 NC_003387.1 + 6123 0.68 0.699245
Target:  5'- aUGCGCGGCAGcggcuUGAGGGCGCCaCUGu -3'
miRNA:   3'- -ACGUGUCGUUu----GCUUUUGCGGgGGCc -5'
12876 5' -52.8 NC_003387.1 + 6831 0.66 0.841296
Target:  5'- cGgGCGGCAGGuCGAu--CGCCCgCuCGGc -3'
miRNA:   3'- aCgUGUCGUUU-GCUuuuGCGGG-G-GCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.