miRNA display CGI


Results 1 - 20 of 175 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12876 5' -52.8 NC_003387.1 + 7841 0.82 0.118389
Target:  5'- gGCGC-GCAGGCGGAaucgccGACGCCCCCGa -3'
miRNA:   3'- aCGUGuCGUUUGCUU------UUGCGGGGGCc -5'
12876 5' -52.8 NC_003387.1 + 51466 0.73 0.459117
Target:  5'- cGCACcGCAAcCGAcaccgcGAACGCCagaCCGGg -3'
miRNA:   3'- aCGUGuCGUUuGCU------UUUGCGGg--GGCC- -5'
12876 5' -52.8 NC_003387.1 + 29487 0.71 0.521856
Target:  5'- gGCACGGCccGCGAGAuggGCGUCgaCCGGc -3'
miRNA:   3'- aCGUGUCGuuUGCUUU---UGCGGg-GGCC- -5'
12876 5' -52.8 NC_003387.1 + 28496 0.66 0.850082
Target:  5'- cGUcgGCGGCAAccACGAcGACGCUaaCCGGc -3'
miRNA:   3'- aCG--UGUCGUU--UGCUuUUGCGGg-GGCC- -5'
12876 5' -52.8 NC_003387.1 + 41730 0.77 0.249401
Target:  5'- gGCACGGC---CGAGGACGUCaCCCGGc -3'
miRNA:   3'- aCGUGUCGuuuGCUUUUGCGG-GGGCC- -5'
12876 5' -52.8 NC_003387.1 + 39277 0.77 0.256035
Target:  5'- aGCugGGCAagcugcucGACGAcgGCaaGCCCCCGGc -3'
miRNA:   3'- aCGugUCGU--------UUGCUuuUG--CGGGGGCC- -5'
12876 5' -52.8 NC_003387.1 + 37204 0.76 0.298136
Target:  5'- cGUGCAGCAGGCGGugcucauAAACGCCgCCGu -3'
miRNA:   3'- aCGUGUCGUUUGCU-------UUUGCGGgGGCc -5'
12876 5' -52.8 NC_003387.1 + 50958 0.75 0.330435
Target:  5'- cGC-CAGC--GCG-AAGCGCCCCCGa -3'
miRNA:   3'- aCGuGUCGuuUGCuUUUGCGGGGGCc -5'
12876 5' -52.8 NC_003387.1 + 38021 0.74 0.382206
Target:  5'- gUGCACcGCAAcggaucgcgGCGAcgGCGCCCCgauCGGg -3'
miRNA:   3'- -ACGUGuCGUU---------UGCUuuUGCGGGG---GCC- -5'
12876 5' -52.8 NC_003387.1 + 21585 0.73 0.459117
Target:  5'- cGCGCGGCAucAGCGAGgccgacgcGGCGCUgCUGGu -3'
miRNA:   3'- aCGUGUCGU--UUGCUU--------UUGCGGgGGCC- -5'
12876 5' -52.8 NC_003387.1 + 24600 0.74 0.410041
Target:  5'- cGCGCAGUAcACGAuugagcuuGCGCgCCUGGg -3'
miRNA:   3'- aCGUGUCGUuUGCUuu------UGCGgGGGCC- -5'
12876 5' -52.8 NC_003387.1 + 45632 0.74 0.373211
Target:  5'- cGUACGGCGAgGCGAAGAUcgGCCgCCUGGc -3'
miRNA:   3'- aCGUGUCGUU-UGCUUUUG--CGG-GGGCC- -5'
12876 5' -52.8 NC_003387.1 + 32543 0.79 0.195932
Target:  5'- gGCGCAGCAGcgcaucaaccGCGcccucGACGCCCUCGGg -3'
miRNA:   3'- aCGUGUCGUU----------UGCuu---UUGCGGGGGCC- -5'
12876 5' -52.8 NC_003387.1 + 9741 0.73 0.439102
Target:  5'- cUGCGCGGCGGuaaggcaaguCGAGGACGCgauCCgCCGGg -3'
miRNA:   3'- -ACGUGUCGUUu---------GCUUUUGCG---GG-GGCC- -5'
12876 5' -52.8 NC_003387.1 + 30651 0.78 0.224279
Target:  5'- aGCGCcugagAGCcAACGAGaAACGCCCCCGa -3'
miRNA:   3'- aCGUG-----UCGuUUGCUU-UUGCGGGGGCc -5'
12876 5' -52.8 NC_003387.1 + 17893 0.75 0.337861
Target:  5'- cGCGCGGgCcgucGACGAAcauucucGACGCCCCCGa -3'
miRNA:   3'- aCGUGUC-Gu---UUGCUU-------UUGCGGGGGCc -5'
12876 5' -52.8 NC_003387.1 + 22949 0.73 0.449048
Target:  5'- cGCGCAGCugaccGCGuGGGGCGCCCCgGu -3'
miRNA:   3'- aCGUGUCGuu---UGC-UUUUGCGGGGgCc -5'
12876 5' -52.8 NC_003387.1 + 23100 0.72 0.488973
Target:  5'- cUGUACGGCAAGcCGcuGGCGCCCggcgcgacccucaCCGGc -3'
miRNA:   3'- -ACGUGUCGUUU-GCuuUUGCGGG-------------GGCC- -5'
12876 5' -52.8 NC_003387.1 + 21394 0.78 0.242911
Target:  5'- cGCGCuaauGCcuuGGACGccAACGCCCCCGGc -3'
miRNA:   3'- aCGUGu---CG---UUUGCuuUUGCGGGGGCC- -5'
12876 5' -52.8 NC_003387.1 + 49798 0.76 0.291381
Target:  5'- gGCGCAGUucGACGAGAGCcucGCCCgCGGc -3'
miRNA:   3'- aCGUGUCGu-UUGCUUUUG---CGGGgGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.