miRNA display CGI


Results 1 - 20 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12929 3' -59.1 NC_003387.1 + 50189 0.66 0.543529
Target:  5'- cGG-CGACCGCGugcggaacaCCGGCCCCucaucAGUCGg -3'
miRNA:   3'- -CCgGUUGGCGC---------GGCUGGGGc----UUAGCa -5'
12929 3' -59.1 NC_003387.1 + 4681 0.66 0.543529
Target:  5'- gGGUgAACUGCuuGCCGugCCCGca-CGUg -3'
miRNA:   3'- -CCGgUUGGCG--CGGCugGGGCuuaGCA- -5'
12929 3' -59.1 NC_003387.1 + 8637 0.66 0.543529
Target:  5'- cGGCCucGCCGU-CUGACCUCGAAacCGUu -3'
miRNA:   3'- -CCGGu-UGGCGcGGCUGGGGCUUa-GCA- -5'
12929 3' -59.1 NC_003387.1 + 22290 0.66 0.533193
Target:  5'- cGGCC-ACCGCcUCGGCCUCGGuuUCa- -3'
miRNA:   3'- -CCGGuUGGCGcGGCUGGGGCUu-AGca -5'
12929 3' -59.1 NC_003387.1 + 19307 0.66 0.533193
Target:  5'- aGGCaCAGCCGCacaaCGGCCUCGcg-CGUg -3'
miRNA:   3'- -CCG-GUUGGCGcg--GCUGGGGCuuaGCA- -5'
12929 3' -59.1 NC_003387.1 + 16148 0.66 0.533193
Target:  5'- gGGCaCcGCCcCGUCGAUCCCGAGU-GUg -3'
miRNA:   3'- -CCG-GuUGGcGCGGCUGGGGCUUAgCA- -5'
12929 3' -59.1 NC_003387.1 + 29375 0.66 0.522928
Target:  5'- cGUCAGCgGCGCCGgugacgACCUCGAucUCGc -3'
miRNA:   3'- cCGGUUGgCGCGGC------UGGGGCUu-AGCa -5'
12929 3' -59.1 NC_003387.1 + 38626 0.66 0.522928
Target:  5'- cGGCCcgcaGGCCGCGCUGGCgCUGcAGUUc- -3'
miRNA:   3'- -CCGG----UUGGCGCGGCUGgGGC-UUAGca -5'
12929 3' -59.1 NC_003387.1 + 33667 0.66 0.522928
Target:  5'- uGGCCcuGGCgGCgaugGUCGACCUCGAcUCGg -3'
miRNA:   3'- -CCGG--UUGgCG----CGGCUGGGGCUuAGCa -5'
12929 3' -59.1 NC_003387.1 + 43790 0.66 0.522928
Target:  5'- cGCCGugcAUCGCGgUGGCCUCGGA-CGUg -3'
miRNA:   3'- cCGGU---UGGCGCgGCUGGGGCUUaGCA- -5'
12929 3' -59.1 NC_003387.1 + 8882 0.66 0.519864
Target:  5'- uGGUgcACCGCcCCGACCUCGGccucgcccucgccgAUCGUg -3'
miRNA:   3'- -CCGguUGGCGcGGCUGGGGCU--------------UAGCA- -5'
12929 3' -59.1 NC_003387.1 + 41022 0.66 0.519864
Target:  5'- gGGUCGACUGCGUCGAcggcgacauugacaCCCaCGcGAUCGc -3'
miRNA:   3'- -CCGGUUGGCGCGGCU--------------GGG-GC-UUAGCa -5'
12929 3' -59.1 NC_003387.1 + 40359 0.66 0.512741
Target:  5'- aGGCCGugAUCGCgGCCGgggccaaggGCCUCGAcGUCGg -3'
miRNA:   3'- -CCGGU--UGGCG-CGGC---------UGGGGCU-UAGCa -5'
12929 3' -59.1 NC_003387.1 + 31057 0.66 0.512741
Target:  5'- cGGCgAACaCGUGCuCGGCCgCCGccgcGGUCGa -3'
miRNA:   3'- -CCGgUUG-GCGCG-GCUGG-GGC----UUAGCa -5'
12929 3' -59.1 NC_003387.1 + 30665 0.66 0.506668
Target:  5'- cGCCAACgGUGCCGgugaucgccgccaccGCCCaCGGaauGUCGa -3'
miRNA:   3'- cCGGUUGgCGCGGC---------------UGGG-GCU---UAGCa -5'
12929 3' -59.1 NC_003387.1 + 3089 0.66 0.502636
Target:  5'- gGGCCAAgCuCGCCGACCggcUCGuaAAUCGg -3'
miRNA:   3'- -CCGGUUgGcGCGGCUGG---GGC--UUAGCa -5'
12929 3' -59.1 NC_003387.1 + 31932 0.66 0.502636
Target:  5'- uGGCUAccgagcagauCCGCGCCGGucgcauCCCCGGccgcaaggucgGUCGUc -3'
miRNA:   3'- -CCGGUu---------GGCGCGGCU------GGGGCU-----------UAGCA- -5'
12929 3' -59.1 NC_003387.1 + 18656 0.66 0.502636
Target:  5'- cGGCCGcCCGCuaaCCGAUUUCGAGuUCGUc -3'
miRNA:   3'- -CCGGUuGGCGc--GGCUGGGGCUU-AGCA- -5'
12929 3' -59.1 NC_003387.1 + 982 0.66 0.502636
Target:  5'- uGCCGccGCCgagGCGCCGA-CCgGggUCGg -3'
miRNA:   3'- cCGGU--UGG---CGCGGCUgGGgCuuAGCa -5'
12929 3' -59.1 NC_003387.1 + 42356 0.67 0.492619
Target:  5'- gGGCCAGCuUGCgGCCcaGGCCCUuaccgGggUCGg -3'
miRNA:   3'- -CCGGUUG-GCG-CGG--CUGGGG-----CuuAGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.