miRNA display CGI


Results 1 - 20 of 161 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12929 5' -52.5 NC_003387.1 + 38947 0.66 0.895628
Target:  5'- aGCGCGAC-CGG-GUCcauacCGAcCGGCCc -3'
miRNA:   3'- -CGUGCUGaGCCuUAGcuu--GCU-GCCGG- -5'
12929 5' -52.5 NC_003387.1 + 35493 0.66 0.865291
Target:  5'- cCACGGCgugCGcucGUCGAGCGGuguaucugccuCGGCCu -3'
miRNA:   3'- cGUGCUGa--GCcu-UAGCUUGCU-----------GCCGG- -5'
12929 5' -52.5 NC_003387.1 + 36784 0.66 0.865291
Target:  5'- gGCGCGAgUCGGc--CG---GGCGGCCu -3'
miRNA:   3'- -CGUGCUgAGCCuuaGCuugCUGCCGG- -5'
12929 5' -52.5 NC_003387.1 + 13680 0.66 0.865291
Target:  5'- aGCACGAgUCG---UCGAcCGGCcGCCa -3'
miRNA:   3'- -CGUGCUgAGCcuuAGCUuGCUGcCGG- -5'
12929 5' -52.5 NC_003387.1 + 7822 0.66 0.865291
Target:  5'- aCGCGAUaCGGAuaugcgCGccCGGCGGCUg -3'
miRNA:   3'- cGUGCUGaGCCUua----GCuuGCUGCCGG- -5'
12929 5' -52.5 NC_003387.1 + 15927 0.66 0.865291
Target:  5'- aGCACGuCgCGGuggCGugcGCGuCGGCCa -3'
miRNA:   3'- -CGUGCuGaGCCuuaGCu--UGCuGCCGG- -5'
12929 5' -52.5 NC_003387.1 + 15639 0.66 0.864481
Target:  5'- cGCACGGCgaggucgaccaugUCGG---CGAACGAauGCCc -3'
miRNA:   3'- -CGUGCUG-------------AGCCuuaGCUUGCUgcCGG- -5'
12929 5' -52.5 NC_003387.1 + 27465 0.66 0.862853
Target:  5'- cGCGCGACgucggcCGGAuagccgguccacauGUCGGcCGAgGuGCCg -3'
miRNA:   3'- -CGUGCUGa-----GCCU--------------UAGCUuGCUgC-CGG- -5'
12929 5' -52.5 NC_003387.1 + 20896 0.66 0.865291
Target:  5'- -gGCGGCgucaUUGGAGgaugCGAuCGGCGGCg -3'
miRNA:   3'- cgUGCUG----AGCCUUa---GCUuGCUGCCGg -5'
12929 5' -52.5 NC_003387.1 + 46256 0.66 0.865291
Target:  5'- cGCGcCGACaaugUCGGAcUCGuugGCGACGccGCCc -3'
miRNA:   3'- -CGU-GCUG----AGCCUuAGCu--UGCUGC--CGG- -5'
12929 5' -52.5 NC_003387.1 + 52198 0.66 0.873256
Target:  5'- gGCAgGuguCUCGGGAUCuucAACcGCGGUCg -3'
miRNA:   3'- -CGUgCu--GAGCCUUAGc--UUGcUGCCGG- -5'
12929 5' -52.5 NC_003387.1 + 5214 0.66 0.873256
Target:  5'- uGCAUGaACUgCGGGgugAUCGggUGAaccgcgacccgcUGGCCg -3'
miRNA:   3'- -CGUGC-UGA-GCCU---UAGCuuGCU------------GCCGG- -5'
12929 5' -52.5 NC_003387.1 + 10778 0.66 0.895628
Target:  5'- -gGCGGCcugcaucgUCGGGucGUCGGcguCGGCGGCa -3'
miRNA:   3'- cgUGCUG--------AGCCU--UAGCUu--GCUGCCGg -5'
12929 5' -52.5 NC_003387.1 + 6366 0.66 0.895628
Target:  5'- cGCGCuuGGcCUCGGccgCGGGCGAC-GCCu -3'
miRNA:   3'- -CGUG--CU-GAGCCuuaGCUUGCUGcCGG- -5'
12929 5' -52.5 NC_003387.1 + 19728 0.66 0.895628
Target:  5'- aGCACGGCcCGc--UCGAACG-CGGgCa -3'
miRNA:   3'- -CGUGCUGaGCcuuAGCUUGCuGCCgG- -5'
12929 5' -52.5 NC_003387.1 + 33985 0.66 0.888431
Target:  5'- cGCAgCGGgUCGcGGUCGA-CGACGaGCUg -3'
miRNA:   3'- -CGU-GCUgAGCcUUAGCUuGCUGC-CGG- -5'
12929 5' -52.5 NC_003387.1 + 7512 0.66 0.888431
Target:  5'- cCACGAUcggcCGcGggUCGAACG--GGCCg -3'
miRNA:   3'- cGUGCUGa---GC-CuuAGCUUGCugCCGG- -5'
12929 5' -52.5 NC_003387.1 + 44526 0.66 0.880972
Target:  5'- cGCACGACgUCGcuGUCGAaaacgcgcacGCGGaucaggaagUGGCCg -3'
miRNA:   3'- -CGUGCUG-AGCcuUAGCU----------UGCU---------GCCGG- -5'
12929 5' -52.5 NC_003387.1 + 51852 0.66 0.880212
Target:  5'- gGUACGuCUugccggucugccgCGGGAUCGAcauuGCGAacaugUGGCCg -3'
miRNA:   3'- -CGUGCuGA-------------GCCUUAGCU----UGCU-----GCCGG- -5'
12929 5' -52.5 NC_003387.1 + 19475 0.66 0.873256
Target:  5'- gGCAgGACgUCG---UCGAGCacguacgucuuGACGGCCa -3'
miRNA:   3'- -CGUgCUG-AGCcuuAGCUUG-----------CUGCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.