miRNA display CGI


Results 1 - 20 of 161 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12929 5' -52.5 NC_003387.1 + 23547 1.16 0.000856
Target:  5'- cGCACGACUCGGAAUCGAACGACGGCCg -3'
miRNA:   3'- -CGUGCUGAGCCUUAGCUUGCUGCCGG- -5'
12929 5' -52.5 NC_003387.1 + 49443 0.8 0.20158
Target:  5'- gGC-CGugUCGGggUCGucguccauuuCGGCGGCCa -3'
miRNA:   3'- -CGuGCugAGCCuuAGCuu--------GCUGCCGG- -5'
12929 5' -52.5 NC_003387.1 + 994 0.8 0.218301
Target:  5'- gGCGcCGAC-CGGggUCGGAUGcgcuGCGGCCu -3'
miRNA:   3'- -CGU-GCUGaGCCuuAGCUUGC----UGCCGG- -5'
12929 5' -52.5 NC_003387.1 + 3910 0.79 0.236194
Target:  5'- aGCACGAC-CGGcg--GGACGAUGGCCg -3'
miRNA:   3'- -CGUGCUGaGCCuuagCUUGCUGCCGG- -5'
12929 5' -52.5 NC_003387.1 + 35690 0.78 0.268731
Target:  5'- gGCACGugUgGGGGcCGuacggcGACGACGGCCu -3'
miRNA:   3'- -CGUGCugAgCCUUaGC------UUGCUGCCGG- -5'
12929 5' -52.5 NC_003387.1 + 15020 0.78 0.282725
Target:  5'- cGCGCGGgUCGGcGUCGucCGACaGGCCc -3'
miRNA:   3'- -CGUGCUgAGCCuUAGCuuGCUG-CCGG- -5'
12929 5' -52.5 NC_003387.1 + 21585 0.76 0.352808
Target:  5'- uGCACGACUCGauguucUCGGGCGGCGcCCa -3'
miRNA:   3'- -CGUGCUGAGCcuu---AGCUUGCUGCcGG- -5'
12929 5' -52.5 NC_003387.1 + 14229 0.76 0.352808
Target:  5'- cGCACGcccacggccGCUCGGGAUCGGGcCGACuGGUa -3'
miRNA:   3'- -CGUGC---------UGAGCCUUAGCUU-GCUG-CCGg -5'
12929 5' -52.5 NC_003387.1 + 22477 0.76 0.361314
Target:  5'- -gACGACcgCGGcGUCGuaccgGGCGACGGCCu -3'
miRNA:   3'- cgUGCUGa-GCCuUAGC-----UUGCUGCCGG- -5'
12929 5' -52.5 NC_003387.1 + 27641 0.76 0.37875
Target:  5'- gGCGuuCGACUCGuGggUC-AACGGCGGCg -3'
miRNA:   3'- -CGU--GCUGAGC-CuuAGcUUGCUGCCGg -5'
12929 5' -52.5 NC_003387.1 + 1442 0.75 0.387678
Target:  5'- gGCAgGGCUCGGGgucgucguccucGUCGAGgucguCGAgGGCCa -3'
miRNA:   3'- -CGUgCUGAGCCU------------UAGCUU-----GCUgCCGG- -5'
12929 5' -52.5 NC_003387.1 + 44588 0.75 0.423786
Target:  5'- -gGCGAucCUCaaGGAGUCGAGCGACgccgucgGGCCg -3'
miRNA:   3'- cgUGCU--GAG--CCUUAGCUUGCUG-------CCGG- -5'
12929 5' -52.5 NC_003387.1 + 29208 0.75 0.424738
Target:  5'- -aACGAUUCGGggUCG-GCGcgguUGGCCg -3'
miRNA:   3'- cgUGCUGAGCCuuAGCuUGCu---GCCGG- -5'
12929 5' -52.5 NC_003387.1 + 41120 0.74 0.4324
Target:  5'- uGCACGAC-CGGAucaaguggcagCGcgcCGACGGCCg -3'
miRNA:   3'- -CGUGCUGaGCCUua---------GCuu-GCUGCCGG- -5'
12929 5' -52.5 NC_003387.1 + 43246 0.74 0.473899
Target:  5'- cGC-CGuACUCGGggUCGAAauCGuCGGCg -3'
miRNA:   3'- -CGuGC-UGAGCCuuAGCUU--GCuGCCGg -5'
12929 5' -52.5 NC_003387.1 + 24816 0.73 0.484073
Target:  5'- gGCGCagcaGCUCGGcguacUCGGGCGGCuGGCCg -3'
miRNA:   3'- -CGUGc---UGAGCCuu---AGCUUGCUG-CCGG- -5'
12929 5' -52.5 NC_003387.1 + 45219 0.73 0.490228
Target:  5'- cCGCGGCcgaucguggcguggUCGGAGUCGAugGgcuggacGCGGCUg -3'
miRNA:   3'- cGUGCUG--------------AGCCUUAGCUugC-------UGCCGG- -5'
12929 5' -52.5 NC_003387.1 + 43115 0.73 0.504728
Target:  5'- aGCGCGACggcgCGGcgccgCGGugGugGGCg -3'
miRNA:   3'- -CGUGCUGa---GCCuua--GCUugCugCCGg -5'
12929 5' -52.5 NC_003387.1 + 1606 0.73 0.514146
Target:  5'- cGCACGGCcuggcgauuucggUCGGcgcgugcuggcuGAUgGAcgACGACGGCCg -3'
miRNA:   3'- -CGUGCUG-------------AGCC------------UUAgCU--UGCUGCCGG- -5'
12929 5' -52.5 NC_003387.1 + 18465 0.73 0.515197
Target:  5'- cGCcCGACUCGGcgaucagccGGUCGAGCgccccGAgGGCCu -3'
miRNA:   3'- -CGuGCUGAGCC---------UUAGCUUG-----CUgCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.