miRNA display CGI


Results 1 - 20 of 161 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12929 5' -52.5 NC_003387.1 + 23547 1.16 0.000856
Target:  5'- cGCACGACUCGGAAUCGAACGACGGCCg -3'
miRNA:   3'- -CGUGCUGAGCCUUAGCUUGCUGCCGG- -5'
12929 5' -52.5 NC_003387.1 + 50192 0.7 0.656546
Target:  5'- uGCGCGAC-CGGGA-CGGcaACGACGaCCc -3'
miRNA:   3'- -CGUGCUGaGCCUUaGCU--UGCUGCcGG- -5'
12929 5' -52.5 NC_003387.1 + 7841 0.7 0.678475
Target:  5'- gGCGCGcaggCGGAAUCGccgacgccccCGACGGCUa -3'
miRNA:   3'- -CGUGCuga-GCCUUAGCuu--------GCUGCCGG- -5'
12929 5' -52.5 NC_003387.1 + 21260 0.66 0.895628
Target:  5'- cCGCGACgaGGAGUCGGGCaaGGUGGCg -3'
miRNA:   3'- cGUGCUGagCCUUAGCUUG--CUGCCGg -5'
12929 5' -52.5 NC_003387.1 + 41120 0.74 0.4324
Target:  5'- uGCACGAC-CGGAucaaguggcagCGcgcCGACGGCCg -3'
miRNA:   3'- -CGUGCUGaGCCUua---------GCuu-GCUGCCGG- -5'
12929 5' -52.5 NC_003387.1 + 45219 0.73 0.490228
Target:  5'- cCGCGGCcgaucguggcguggUCGGAGUCGAugGgcuggacGCGGCUg -3'
miRNA:   3'- cGUGCUG--------------AGCCUUAGCUugC-------UGCCGG- -5'
12929 5' -52.5 NC_003387.1 + 1606 0.73 0.514146
Target:  5'- cGCACGGCcuggcgauuucggUCGGcgcgugcuggcuGAUgGAcgACGACGGCCg -3'
miRNA:   3'- -CGUGCUG-------------AGCC------------UUAgCU--UGCUGCCGG- -5'
12929 5' -52.5 NC_003387.1 + 18547 0.73 0.525753
Target:  5'- uGCGCGAgUCGu--UCGAGCGcaaGGCCg -3'
miRNA:   3'- -CGUGCUgAGCcuuAGCUUGCug-CCGG- -5'
12929 5' -52.5 NC_003387.1 + 30250 0.71 0.601503
Target:  5'- gGUACGACgccgCGGucGUCGAguaccGCGA-GGCCa -3'
miRNA:   3'- -CGUGCUGa---GCCu-UAGCU-----UGCUgCCGG- -5'
12929 5' -52.5 NC_003387.1 + 2013 0.7 0.656546
Target:  5'- cGCugGcccuGCUCGGugcCGc-CGACGGCCg -3'
miRNA:   3'- -CGugC----UGAGCCuuaGCuuGCUGCCGG- -5'
12929 5' -52.5 NC_003387.1 + 28435 0.71 0.621305
Target:  5'- -gGCGGCUCauGGuguacacGAUCGAcgagcugGCGGCGGCCc -3'
miRNA:   3'- cgUGCUGAG--CC-------UUAGCU-------UGCUGCCGG- -5'
12929 5' -52.5 NC_003387.1 + 14077 0.72 0.590536
Target:  5'- gGCACGAcCUCGGuaa-GAACGGCGaGUa -3'
miRNA:   3'- -CGUGCU-GAGCCuuagCUUGCUGC-CGg -5'
12929 5' -52.5 NC_003387.1 + 35690 0.78 0.268731
Target:  5'- gGCACGugUgGGGGcCGuacggcGACGACGGCCu -3'
miRNA:   3'- -CGUGCugAgCCUUaGC------UUGCUGCCGG- -5'
12929 5' -52.5 NC_003387.1 + 40281 0.71 0.634526
Target:  5'- uGCGCGACcccUCG--AUCGAggacgACGACGGCa -3'
miRNA:   3'- -CGUGCUG---AGCcuUAGCU-----UGCUGCCGg -5'
12929 5' -52.5 NC_003387.1 + 27641 0.76 0.37875
Target:  5'- gGCGuuCGACUCGuGggUC-AACGGCGGCg -3'
miRNA:   3'- -CGU--GCUGAGC-CuuAGcUUGCUGCCGg -5'
12929 5' -52.5 NC_003387.1 + 27371 0.72 0.568715
Target:  5'- uGCAaGACUCGGug-CGGGCGuucACGGCg -3'
miRNA:   3'- -CGUgCUGAGCCuuaGCUUGC---UGCCGg -5'
12929 5' -52.5 NC_003387.1 + 11174 0.71 0.645542
Target:  5'- -gACGACUgUGG--UCGAGCaGugGGCCa -3'
miRNA:   3'- cgUGCUGA-GCCuuAGCUUG-CugCCGG- -5'
12929 5' -52.5 NC_003387.1 + 49168 0.7 0.667527
Target:  5'- aGCGCGcaggCGGucgCGcaGGCGGCGGCCg -3'
miRNA:   3'- -CGUGCuga-GCCuuaGC--UUGCUGCCGG- -5'
12929 5' -52.5 NC_003387.1 + 44588 0.75 0.423786
Target:  5'- -gGCGAucCUCaaGGAGUCGAGCGACgccgucgGGCCg -3'
miRNA:   3'- cgUGCU--GAG--CCUUAGCUUGCUG-------CCGG- -5'
12929 5' -52.5 NC_003387.1 + 43115 0.73 0.504728
Target:  5'- aGCGCGACggcgCGGcgccgCGGugGugGGCg -3'
miRNA:   3'- -CGUGCUGa---GCCuua--GCUugCugCCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.