miRNA display CGI


Results 1 - 20 of 161 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12929 5' -52.5 NC_003387.1 + 711 0.69 0.711011
Target:  5'- uGCGCcGCaaGGcAUCGuguCGACGGCCu -3'
miRNA:   3'- -CGUGcUGagCCuUAGCuu-GCUGCCGG- -5'
12929 5' -52.5 NC_003387.1 + 794 0.68 0.793508
Target:  5'- aGgACGAcCUCGGcaagcugauuuGcgCGAagcgcgACGACGGCCu -3'
miRNA:   3'- -CgUGCU-GAGCC-----------UuaGCU------UGCUGCCGG- -5'
12929 5' -52.5 NC_003387.1 + 804 0.68 0.782676
Target:  5'- uCACGaugaugucggccaGCUCGGGcagcaccUCGAcgagcuucucgGCGACGGCCu -3'
miRNA:   3'- cGUGC-------------UGAGCCUu------AGCU-----------UGCUGCCGG- -5'
12929 5' -52.5 NC_003387.1 + 994 0.8 0.218301
Target:  5'- gGCGcCGAC-CGGggUCGGAUGcgcuGCGGCCu -3'
miRNA:   3'- -CGU-GCUGaGCCuuAGCUUGC----UGCCGG- -5'
12929 5' -52.5 NC_003387.1 + 1442 0.75 0.387678
Target:  5'- gGCAgGGCUCGGGgucgucguccucGUCGAGgucguCGAgGGCCa -3'
miRNA:   3'- -CGUgCUGAGCCU------------UAGCUU-----GCUgCCGG- -5'
12929 5' -52.5 NC_003387.1 + 1540 0.66 0.873256
Target:  5'- gGCACGACcuguucgaccUCGGcccCGAG-GACGGCg -3'
miRNA:   3'- -CGUGCUG----------AGCCuuaGCUUgCUGCCGg -5'
12929 5' -52.5 NC_003387.1 + 1606 0.73 0.514146
Target:  5'- cGCACGGCcuggcgauuucggUCGGcgcgugcuggcuGAUgGAcgACGACGGCCg -3'
miRNA:   3'- -CGUGCUG-------------AGCC------------UUAgCU--UGCUGCCGG- -5'
12929 5' -52.5 NC_003387.1 + 2013 0.7 0.656546
Target:  5'- cGCugGcccuGCUCGGugcCGc-CGACGGCCg -3'
miRNA:   3'- -CGugC----UGAGCCuuaGCuuGCUGCCGG- -5'
12929 5' -52.5 NC_003387.1 + 2456 0.68 0.763527
Target:  5'- uCACGAucacCUCGGug-CGcACGuCGGCCa -3'
miRNA:   3'- cGUGCU----GAGCCuuaGCuUGCuGCCGG- -5'
12929 5' -52.5 NC_003387.1 + 2706 0.66 0.888431
Target:  5'- aGguUGuGCUCGGcgacgCGGGCGGCGGgCa -3'
miRNA:   3'- -CguGC-UGAGCCuua--GCUUGCUGCCgG- -5'
12929 5' -52.5 NC_003387.1 + 3910 0.79 0.236194
Target:  5'- aGCACGAC-CGGcg--GGACGAUGGCCg -3'
miRNA:   3'- -CGUGCUGaGCCuuagCUUGCUGCCGG- -5'
12929 5' -52.5 NC_003387.1 + 4489 0.67 0.860394
Target:  5'- gGC-CGAC-CGGGcgCGAcACGAucgugcgggucaccuCGGCCg -3'
miRNA:   3'- -CGuGCUGaGCCUuaGCU-UGCU---------------GCCGG- -5'
12929 5' -52.5 NC_003387.1 + 4712 0.7 0.689379
Target:  5'- aGCAgGGCUgGGAAcCGGcCGA-GGCCg -3'
miRNA:   3'- -CGUgCUGAgCCUUaGCUuGCUgCCGG- -5'
12929 5' -52.5 NC_003387.1 + 4775 0.66 0.880972
Target:  5'- gGCGCcguGACUUcauGUCGcaggcccgcGGCGACGGCCa -3'
miRNA:   3'- -CGUG---CUGAGccuUAGC---------UUGCUGCCGG- -5'
12929 5' -52.5 NC_003387.1 + 5214 0.66 0.873256
Target:  5'- uGCAUGaACUgCGGGgugAUCGggUGAaccgcgacccgcUGGCCg -3'
miRNA:   3'- -CGUGC-UGA-GCCU---UAGCuuGCU------------GCCGG- -5'
12929 5' -52.5 NC_003387.1 + 5301 0.67 0.830171
Target:  5'- uGCAUGAggcccucCUCGGGcUCgGGGCGG-GGCCg -3'
miRNA:   3'- -CGUGCU-------GAGCCUuAG-CUUGCUgCCGG- -5'
12929 5' -52.5 NC_003387.1 + 5439 0.67 0.848637
Target:  5'- --uCGACcgaGGGcgCcGACGGCGGCCa -3'
miRNA:   3'- cguGCUGag-CCUuaGcUUGCUGCCGG- -5'
12929 5' -52.5 NC_003387.1 + 5500 0.67 0.821971
Target:  5'- aGCuuGACaaGGuGAUCGAGCaGCGGCUc -3'
miRNA:   3'- -CGugCUGagCC-UUAGCUUGcUGCCGG- -5'
12929 5' -52.5 NC_003387.1 + 5699 0.69 0.742845
Target:  5'- uGCcCGGC-CGGGccgccaaugaaGUCGAGCaccaGGCGGCCc -3'
miRNA:   3'- -CGuGCUGaGCCU-----------UAGCUUG----CUGCCGG- -5'
12929 5' -52.5 NC_003387.1 + 6366 0.66 0.895628
Target:  5'- cGCGCuuGGcCUCGGccgCGGGCGAC-GCCu -3'
miRNA:   3'- -CGUG--CU-GAGCCuuaGCUUGCUGcCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.