Results 1 - 20 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12933 | 5' | -62.8 | NC_003387.1 | + | 27950 | 0.66 | 0.335861 |
Target: 5'- cGGuCGGggcGCUcGGCGUGCUcGGCUUGg -3' miRNA: 3'- cCC-GCCa--CGGcCCGUACGA-CCGAGCa -5' |
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12933 | 5' | -62.8 | NC_003387.1 | + | 22685 | 0.72 | 0.125042 |
Target: 5'- uGGGCGGUGUCGacGGCGgcGCUGGCg--- -3' miRNA: 3'- -CCCGCCACGGC--CCGUa-CGACCGagca -5' |
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12933 | 5' | -62.8 | NC_003387.1 | + | 30429 | 0.71 | 0.13915 |
Target: 5'- aGGCGGcuUGCCGGGUuUGUUGGCg--- -3' miRNA: 3'- cCCGCC--ACGGCCCGuACGACCGagca -5' |
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12933 | 5' | -62.8 | NC_003387.1 | + | 24837 | 0.71 | 0.150674 |
Target: 5'- cGGGCGGcugGCCGGGCuc-CUG-CUCGa -3' miRNA: 3'- -CCCGCCa--CGGCCCGuacGACcGAGCa -5' |
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12933 | 5' | -62.8 | NC_003387.1 | + | 75 | 0.71 | 0.154704 |
Target: 5'- cGGCGccG-CGGGCGuuUGCUGGCUCGa -3' miRNA: 3'- cCCGCcaCgGCCCGU--ACGACCGAGCa -5' |
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12933 | 5' | -62.8 | NC_003387.1 | + | 9669 | 0.7 | 0.171817 |
Target: 5'- gGGGCGGUGCgGGGUcaGCUcGCcCGUc -3' miRNA: 3'- -CCCGCCACGgCCCGuaCGAcCGaGCA- -5' |
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12933 | 5' | -62.8 | NC_003387.1 | + | 17496 | 0.68 | 0.251729 |
Target: 5'- cGGGCGccgcggccguaGUGCuCGGccaGCAUGCgcagcGGCUCGg -3' miRNA: 3'- -CCCGC-----------CACG-GCC---CGUACGa----CCGAGCa -5' |
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12933 | 5' | -62.8 | NC_003387.1 | + | 48937 | 0.67 | 0.270994 |
Target: 5'- cGGCGGguugcUGgCGGGCggGCUG-CUCGg -3' miRNA: 3'- cCCGCC-----ACgGCCCGuaCGACcGAGCa -5' |
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12933 | 5' | -62.8 | NC_003387.1 | + | 49199 | 0.67 | 0.284485 |
Target: 5'- gGGGCGGcgGCgGgGGCAcugGCgccGGUUCGUu -3' miRNA: 3'- -CCCGCCa-CGgC-CCGUa--CGa--CCGAGCA- -5' |
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12933 | 5' | -62.8 | NC_003387.1 | + | 52407 | 0.66 | 0.320519 |
Target: 5'- -uGCGuGUcGCCGGGCucggGCUccaccGGCUCGg -3' miRNA: 3'- ccCGC-CA-CGGCCCGua--CGA-----CCGAGCa -5' |
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12933 | 5' | -62.8 | NC_003387.1 | + | 48826 | 0.66 | 0.320519 |
Target: 5'- aGGCGGUcaggGUCGGGCAgcgGCgccGGUUCc- -3' miRNA: 3'- cCCGCCA----CGGCCCGUa--CGa--CCGAGca -5' |
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12933 | 5' | -62.8 | NC_003387.1 | + | 29317 | 0.66 | 0.320519 |
Target: 5'- aGGCGccgcgcuUGUCGGGCAUGUUcaGCUCGUc -3' miRNA: 3'- cCCGCc------ACGGCCCGUACGAc-CGAGCA- -5' |
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12933 | 5' | -62.8 | NC_003387.1 | + | 14805 | 0.67 | 0.298502 |
Target: 5'- cGGCGGUGCCgagccacgcGGGCA-GC-GGgUCGc -3' miRNA: 3'- cCCGCCACGG---------CCCGUaCGaCCgAGCa -5' |
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12933 | 5' | -62.8 | NC_003387.1 | + | 31188 | 0.67 | 0.296366 |
Target: 5'- cGGGCGucGCCGGugcugauacucagcGCAgcgGCcGGCUCGUg -3' miRNA: 3'- -CCCGCcaCGGCC--------------CGUa--CGaCCGAGCA- -5' |
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12933 | 5' | -62.8 | NC_003387.1 | + | 3418 | 0.67 | 0.291428 |
Target: 5'- gGGGCcGUGCCcucGGCGUGCUcGGCgagCa- -3' miRNA: 3'- -CCCGcCACGGc--CCGUACGA-CCGa--Gca -5' |
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12933 | 5' | -62.8 | NC_003387.1 | + | 42078 | 0.66 | 0.335861 |
Target: 5'- uGGcGCGcGUGCUGcGgGUGCccGGCUCGUa -3' miRNA: 3'- -CC-CGC-CACGGCcCgUACGa-CCGAGCA- -5' |
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12933 | 5' | -62.8 | NC_003387.1 | + | 47030 | 0.73 | 0.09802 |
Target: 5'- uGGCGGcccgGCCGGGCAUGaggcgugGcGCUCGUu -3' miRNA: 3'- cCCGCCa---CGGCCCGUACga-----C-CGAGCA- -5' |
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12933 | 5' | -62.8 | NC_003387.1 | + | 30720 | 0.72 | 0.125042 |
Target: 5'- gGGGCGcucaGCCGGGCAgGUgacccGGCUCGUc -3' miRNA: 3'- -CCCGCca--CGGCCCGUaCGa----CCGAGCA- -5' |
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12933 | 5' | -62.8 | NC_003387.1 | + | 12440 | 0.7 | 0.180992 |
Target: 5'- aGGGCGcUGCCGaGGUucGCUGGCggCGg -3' miRNA: 3'- -CCCGCcACGGC-CCGuaCGACCGa-GCa -5' |
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12933 | 5' | -62.8 | NC_003387.1 | + | 49591 | 0.7 | 0.180992 |
Target: 5'- cGGGCGGUgGCCuGGCAgugcugccGCUGGCggcccCGa -3' miRNA: 3'- -CCCGCCA-CGGcCCGUa-------CGACCGa----GCa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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