miRNA display CGI


Results 1 - 20 of 329 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12942 3' -54.8 NC_003387.1 + 37296 0.66 0.751502
Target:  5'- cGCuCGUCGGCGcgGucgUCGAcCGCGCCg -3'
miRNA:   3'- -UG-GCGGCCGUuuUug-AGCUcGCGUGG- -5'
12942 3' -54.8 NC_003387.1 + 985 0.66 0.730441
Target:  5'- cGCCGCCgaGGCGccGACcggggUCGGauGCGCugCg -3'
miRNA:   3'- -UGGCGG--CCGUuuUUG-----AGCU--CGCGugG- -5'
12942 3' -54.8 NC_003387.1 + 46045 0.66 0.730441
Target:  5'- aGCUGUCGGCAAucacCUCGAucgccgcgucgGCGUcCCa -3'
miRNA:   3'- -UGGCGGCCGUUuuu-GAGCU-----------CGCGuGG- -5'
12942 3' -54.8 NC_003387.1 + 32103 0.66 0.730441
Target:  5'- cCCGCCGGUuucgacacAGAACUCGAcaGCGaACg -3'
miRNA:   3'- uGGCGGCCGu-------UUUUGAGCU--CGCgUGg -5'
12942 3' -54.8 NC_003387.1 + 28039 0.66 0.730441
Target:  5'- uACUGCCGGuCGGGAuaGCgCGAGU-CACCc -3'
miRNA:   3'- -UGGCGGCC-GUUUU--UGaGCUCGcGUGG- -5'
12942 3' -54.8 NC_003387.1 + 24904 0.66 0.730441
Target:  5'- gACCGaCgGGCGGuacuuCUCGucGgGCACCg -3'
miRNA:   3'- -UGGC-GgCCGUUuuu--GAGCu-CgCGUGG- -5'
12942 3' -54.8 NC_003387.1 + 9770 0.66 0.730441
Target:  5'- uGCCGgggCGGCAcuugg-CGAGCGCgACCa -3'
miRNA:   3'- -UGGCg--GCCGUuuuugaGCUCGCG-UGG- -5'
12942 3' -54.8 NC_003387.1 + 7842 0.66 0.730441
Target:  5'- cCCGgCGGCugcgucAGCUCG-GCcaGCACCu -3'
miRNA:   3'- uGGCgGCCGuuu---UUGAGCuCG--CGUGG- -5'
12942 3' -54.8 NC_003387.1 + 45079 0.66 0.730441
Target:  5'- gUCGCCGuGCAccuuGAACUUGcgcccccGCGCAUCg -3'
miRNA:   3'- uGGCGGC-CGUu---UUUGAGCu------CGCGUGG- -5'
12942 3' -54.8 NC_003387.1 + 7321 0.66 0.741027
Target:  5'- aACCGUcacgauCGGCucGGGCggcCGGGCGCAgCu -3'
miRNA:   3'- -UGGCG------GCCGuuUUUGa--GCUCGCGUgG- -5'
12942 3' -54.8 NC_003387.1 + 22389 0.66 0.741027
Target:  5'- gGCCGCCGGgcacCAGGAAaa--AGCGcCGCCa -3'
miRNA:   3'- -UGGCGGCC----GUUUUUgagcUCGC-GUGG- -5'
12942 3' -54.8 NC_003387.1 + 29601 0.66 0.741027
Target:  5'- cGuuGCCGGUGAGGgucgcGC-CGGGCGCcagcggcuuGCCg -3'
miRNA:   3'- -UggCGGCCGUUUU-----UGaGCUCGCG---------UGG- -5'
12942 3' -54.8 NC_003387.1 + 16457 0.66 0.748372
Target:  5'- gGCCGCCauaauccacagcccGGCGuAAACcauugCGAGaGCGCCc -3'
miRNA:   3'- -UGGCGG--------------CCGUuUUUGa----GCUCgCGUGG- -5'
12942 3' -54.8 NC_003387.1 + 6713 0.66 0.748372
Target:  5'- cACCGCgGGCAGuucaccgucGAcucgccccGCUCGAcauacaggcccacaGCGCACg -3'
miRNA:   3'- -UGGCGgCCGUU---------UU--------UGAGCU--------------CGCGUGg -5'
12942 3' -54.8 NC_003387.1 + 44430 0.66 0.74208
Target:  5'- -gCGCCGGUGAuccacacgucgccCUCGGGCguguGCACCu -3'
miRNA:   3'- ugGCGGCCGUUuuu----------GAGCUCG----CGUGG- -5'
12942 3' -54.8 NC_003387.1 + 50788 0.66 0.741027
Target:  5'- aACCGCCuGCGucgcggaUCGGGCGUuuacgggcGCCa -3'
miRNA:   3'- -UGGCGGcCGUuuuug--AGCUCGCG--------UGG- -5'
12942 3' -54.8 NC_003387.1 + 33739 0.66 0.741027
Target:  5'- cGCCGCCaGCucgucgauGCUCGccGGgGUGCCg -3'
miRNA:   3'- -UGGCGGcCGuuuu----UGAGC--UCgCGUGG- -5'
12942 3' -54.8 NC_003387.1 + 29691 0.66 0.741027
Target:  5'- cGCCGCCgGGCAcguuGAACUgcuGCGUcgaGCCg -3'
miRNA:   3'- -UGGCGG-CCGUu---UUUGAgcuCGCG---UGG- -5'
12942 3' -54.8 NC_003387.1 + 29021 0.66 0.741027
Target:  5'- cGCCGCCugGGCGuu-GCUCGcguuguauccGGC-CGCCu -3'
miRNA:   3'- -UGGCGG--CCGUuuuUGAGC----------UCGcGUGG- -5'
12942 3' -54.8 NC_003387.1 + 32675 0.66 0.741027
Target:  5'- aGCCcuaCCGGCAA--GCUCuaaauacccuGAGCcaGCACCg -3'
miRNA:   3'- -UGGc--GGCCGUUuuUGAG----------CUCG--CGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.