miRNA display CGI


Results 1 - 20 of 329 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12942 3' -54.8 NC_003387.1 + 174 0.66 0.698132
Target:  5'- gGCCGaCGGCAAGAcgguGCUCGAcucggcccGCGacauuGCCg -3'
miRNA:   3'- -UGGCgGCCGUUUU----UGAGCU--------CGCg----UGG- -5'
12942 3' -54.8 NC_003387.1 + 467 0.69 0.532455
Target:  5'- gGCCGacggcgaCCGGCGcGAGCUgcucgucgCGAuGCGCGCCc -3'
miRNA:   3'- -UGGC-------GGCCGUuUUUGA--------GCU-CGCGUGG- -5'
12942 3' -54.8 NC_003387.1 + 812 0.73 0.32513
Target:  5'- -aUGUCGGCc--AGCUCGGGCaGCACCu -3'
miRNA:   3'- ugGCGGCCGuuuUUGAGCUCG-CGUGG- -5'
12942 3' -54.8 NC_003387.1 + 870 0.71 0.448853
Target:  5'- cCCGCggcagacCGGCAAGAcguaccuGCUCG-GCGCGCUc -3'
miRNA:   3'- uGGCG-------GCCGUUUU-------UGAGCuCGCGUGG- -5'
12942 3' -54.8 NC_003387.1 + 985 0.66 0.730441
Target:  5'- cGCCGCCgaGGCGccGACcggggUCGGauGCGCugCg -3'
miRNA:   3'- -UGGCGG--CCGUuuUUG-----AGCU--CGCGugG- -5'
12942 3' -54.8 NC_003387.1 + 1376 0.67 0.676249
Target:  5'- cGCCGUCGGCGcucAGCgggUCGGGguCGCGCUc -3'
miRNA:   3'- -UGGCGGCCGUuu-UUG---AGCUC--GCGUGG- -5'
12942 3' -54.8 NC_003387.1 + 1691 0.69 0.532455
Target:  5'- cACCGCggCGGCGGucGACUggaucgcUGAGCGgGCCg -3'
miRNA:   3'- -UGGCG--GCCGUUu-UUGA-------GCUCGCgUGG- -5'
12942 3' -54.8 NC_003387.1 + 1747 0.7 0.470882
Target:  5'- cGCCcCCGGCcgcuaucGGCUCGGGgGCGCUu -3'
miRNA:   3'- -UGGcGGCCGuuu----UUGAGCUCgCGUGG- -5'
12942 3' -54.8 NC_003387.1 + 1954 0.72 0.402858
Target:  5'- gGCCGCgGGUcu-GGC-CGGGCaGCGCCa -3'
miRNA:   3'- -UGGCGgCCGuuuUUGaGCUCG-CGUGG- -5'
12942 3' -54.8 NC_003387.1 + 1993 0.68 0.632062
Target:  5'- -aCGCaCGGCGucGAGguaacGCUCGAccuuguGCGCGCCc -3'
miRNA:   3'- ugGCG-GCCGU--UUU-----UGAGCU------CGCGUGG- -5'
12942 3' -54.8 NC_003387.1 + 2012 0.66 0.708982
Target:  5'- -aCGCUGGCccu-GCUCG-GUGcCGCCg -3'
miRNA:   3'- ugGCGGCCGuuuuUGAGCuCGC-GUGG- -5'
12942 3' -54.8 NC_003387.1 + 2354 0.72 0.384595
Target:  5'- cGCCGUCGGCG-----UCGAGCGcCACg -3'
miRNA:   3'- -UGGCGGCCGUuuuugAGCUCGC-GUGg -5'
12942 3' -54.8 NC_003387.1 + 2390 0.74 0.308675
Target:  5'- uGCCGCgGGCGGccugaauGAAgUCGGGgCGCAUCg -3'
miRNA:   3'- -UGGCGgCCGUU-------UUUgAGCUC-GCGUGG- -5'
12942 3' -54.8 NC_003387.1 + 2420 0.66 0.730441
Target:  5'- cCCGCCuGgGAGAugUgGcAGCGCaACCg -3'
miRNA:   3'- uGGCGGcCgUUUUugAgC-UCGCG-UGG- -5'
12942 3' -54.8 NC_003387.1 + 2553 0.66 0.751502
Target:  5'- cGCCG-CGGCAGAucCUCGccGUGUACg -3'
miRNA:   3'- -UGGCgGCCGUUUuuGAGCu-CGCGUGg -5'
12942 3' -54.8 NC_003387.1 + 2880 0.69 0.554
Target:  5'- gUCGUacauCGGCAGGAACUCGcucgccgGGCGCGgCa -3'
miRNA:   3'- uGGCG----GCCGUUUUUGAGC-------UCGCGUgG- -5'
12942 3' -54.8 NC_003387.1 + 2918 0.7 0.470882
Target:  5'- gGCCGCgGGCGAGGcuCUCGucgaacUGCGCCa -3'
miRNA:   3'- -UGGCGgCCGUUUUu-GAGCuc----GCGUGG- -5'
12942 3' -54.8 NC_003387.1 + 3147 0.78 0.164546
Target:  5'- cACCGcCCGGCAg-----CGGGCGCACCu -3'
miRNA:   3'- -UGGC-GGCCGUuuuugaGCUCGCGUGG- -5'
12942 3' -54.8 NC_003387.1 + 3236 0.68 0.587869
Target:  5'- -aCGCCGGg-------CGGGCGCACCg -3'
miRNA:   3'- ugGCGGCCguuuuugaGCUCGCGUGG- -5'
12942 3' -54.8 NC_003387.1 + 3292 0.67 0.687217
Target:  5'- cCCGacaCGGCcgccGACUCGGGCGC-Cg -3'
miRNA:   3'- uGGCg--GCCGuuu-UUGAGCUCGCGuGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.