miRNA display CGI


Results 1 - 20 of 329 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12942 3' -54.8 NC_003387.1 + 28966 1.11 0.000821
Target:  5'- aACCGCCGGCAAAAACUCGAGCGCACCc -3'
miRNA:   3'- -UGGCGGCCGUUUUUGAGCUCGCGUGG- -5'
12942 3' -54.8 NC_003387.1 + 37757 0.72 0.354832
Target:  5'- aGCUGCuCGGCGAccucaagggcguGCUCaAGCGCGCCu -3'
miRNA:   3'- -UGGCG-GCCGUUuu----------UGAGcUCGCGUGG- -5'
12942 3' -54.8 NC_003387.1 + 10436 0.72 0.375671
Target:  5'- gGCUGUCGGCGGGca-UCGAcaGCGCGCUg -3'
miRNA:   3'- -UGGCGGCCGUUUuugAGCU--CGCGUGG- -5'
12942 3' -54.8 NC_003387.1 + 37296 0.66 0.751502
Target:  5'- cGCuCGUCGGCGcgGucgUCGAcCGCGCCg -3'
miRNA:   3'- -UG-GCGGCCGUuuUug-AGCUcGCGUGG- -5'
12942 3' -54.8 NC_003387.1 + 13647 0.79 0.142894
Target:  5'- cACCGUCGGCGGcgGCUCGgucgccgAGgGCGCCg -3'
miRNA:   3'- -UGGCGGCCGUUuuUGAGC-------UCgCGUGG- -5'
12942 3' -54.8 NC_003387.1 + 9555 0.78 0.173814
Target:  5'- cGCCGCCGGgGugGAUUCGccagcacGCGCACCu -3'
miRNA:   3'- -UGGCGGCCgUuuUUGAGCu------CGCGUGG- -5'
12942 3' -54.8 NC_003387.1 + 49890 0.75 0.272776
Target:  5'- -aUGCCGGCGAGAGC-CGAuuuGUGCGCUg -3'
miRNA:   3'- ugGCGGCCGUUUUUGaGCU---CGCGUGG- -5'
12942 3' -54.8 NC_003387.1 + 12390 0.74 0.287009
Target:  5'- uGCCGCUgcugcaGGCGAucAACUCcGGUGCGCCg -3'
miRNA:   3'- -UGGCGG------CCGUUu-UUGAGcUCGCGUGG- -5'
12942 3' -54.8 NC_003387.1 + 10701 0.74 0.294342
Target:  5'- gGCCGCCGGUAucAAGC-CGGGCGagcaACUg -3'
miRNA:   3'- -UGGCGGCCGUu-UUUGaGCUCGCg---UGG- -5'
12942 3' -54.8 NC_003387.1 + 30041 0.73 0.349751
Target:  5'- cGCCGCCGuCGAcaccGCccaCGAGCGCGCCc -3'
miRNA:   3'- -UGGCGGCcGUUuu--UGa--GCUCGCGUGG- -5'
12942 3' -54.8 NC_003387.1 + 14482 0.73 0.317214
Target:  5'- uGCUGCuCGGCGAGGccACUaaGGGCGCGCUg -3'
miRNA:   3'- -UGGCG-GCCGUUUU--UGAg-CUCGCGUGG- -5'
12942 3' -54.8 NC_003387.1 + 49016 0.74 0.287009
Target:  5'- gGCCGCUGGCAAucGACcUGAGCauCACCg -3'
miRNA:   3'- -UGGCGGCCGUUu-UUGaGCUCGc-GUGG- -5'
12942 3' -54.8 NC_003387.1 + 8424 0.99 0.005296
Target:  5'- aACCGCCGGCAAAAACUCGAGCaCACCc -3'
miRNA:   3'- -UGGCGGCCGUUUUUGAGCUCGcGUGG- -5'
12942 3' -54.8 NC_003387.1 + 4290 0.73 0.341399
Target:  5'- gGCCGCgGGCGA--GC---AGCGCACCg -3'
miRNA:   3'- -UGGCGgCCGUUuuUGagcUCGCGUGG- -5'
12942 3' -54.8 NC_003387.1 + 22722 0.92 0.01808
Target:  5'- aACCGCCGGCAAAAACUCGAGCacccccucuCACCu -3'
miRNA:   3'- -UGGCGGCCGUUUUUGAGCUCGc--------GUGG- -5'
12942 3' -54.8 NC_003387.1 + 30371 0.74 0.287009
Target:  5'- gACCGCCuGCA---GCUCGcuGCGCAUCa -3'
miRNA:   3'- -UGGCGGcCGUuuuUGAGCu-CGCGUGG- -5'
12942 3' -54.8 NC_003387.1 + 22970 0.73 0.349751
Target:  5'- cGCC-CCGGuCAucGugUCGGGCgGCGCCg -3'
miRNA:   3'- -UGGcGGCC-GUuuUugAGCUCG-CGUGG- -5'
12942 3' -54.8 NC_003387.1 + 42442 0.72 0.366888
Target:  5'- cACCGagCGGUucAAGGC-CGAGUGCGCCg -3'
miRNA:   3'- -UGGCg-GCCGu-UUUUGaGCUCGCGUGG- -5'
12942 3' -54.8 NC_003387.1 + 30202 0.81 0.111263
Target:  5'- cGCCgaGCCGGUAcgccGACgUCGAGCGCGCCg -3'
miRNA:   3'- -UGG--CGGCCGUuu--UUG-AGCUCGCGUGG- -5'
12942 3' -54.8 NC_003387.1 + 24818 0.77 0.178621
Target:  5'- cGCCGCCGGUcAAGGCcgCGuGUGCGCUg -3'
miRNA:   3'- -UGGCGGCCGuUUUUGa-GCuCGCGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.