miRNA display CGI


Results 1 - 20 of 329 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12942 3' -54.8 NC_003387.1 + 28966 1.11 0.000821
Target:  5'- aACCGCCGGCAAAAACUCGAGCGCACCc -3'
miRNA:   3'- -UGGCGGCCGUUUUUGAGCUCGCGUGG- -5'
12942 3' -54.8 NC_003387.1 + 7357 1.02 0.003275
Target:  5'- aACCGCCGGCAAAAACUCGAGCGCgucGCCu -3'
miRNA:   3'- -UGGCGGCCGUUUUUGAGCUCGCG---UGG- -5'
12942 3' -54.8 NC_003387.1 + 8424 0.99 0.005296
Target:  5'- aACCGCCGGCAAAAACUCGAGCaCACCc -3'
miRNA:   3'- -UGGCGGCCGUUUUUGAGCUCGcGUGG- -5'
12942 3' -54.8 NC_003387.1 + 22722 0.92 0.01808
Target:  5'- aACCGCCGGCAAAAACUCGAGCacccccucuCACCu -3'
miRNA:   3'- -UGGCGGCCGUUUUUGAGCUCGc--------GUGG- -5'
12942 3' -54.8 NC_003387.1 + 6786 0.81 0.096493
Target:  5'- gGCCGUCGGCGAAcacGCUCGGGCacGUGCCg -3'
miRNA:   3'- -UGGCGGCCGUUUu--UGAGCUCG--CGUGG- -5'
12942 3' -54.8 NC_003387.1 + 6054 0.81 0.102164
Target:  5'- -gCGCCgGGCAGG--UUCGAGCGCACCa -3'
miRNA:   3'- ugGCGG-CCGUUUuuGAGCUCGCGUGG- -5'
12942 3' -54.8 NC_003387.1 + 30202 0.81 0.111263
Target:  5'- cGCCgaGCCGGUAcgccGACgUCGAGCGCGCCg -3'
miRNA:   3'- -UGG--CGGCCGUuu--UUG-AGCUCGCGUGG- -5'
12942 3' -54.8 NC_003387.1 + 13647 0.79 0.142894
Target:  5'- cACCGUCGGCGGcgGCUCGgucgccgAGgGCGCCg -3'
miRNA:   3'- -UGGCGGCCGUUuuUGAGC-------UCgCGUGG- -5'
12942 3' -54.8 NC_003387.1 + 35583 0.79 0.143292
Target:  5'- gGCCGCCGGUGAcAGCcggucgaggucgUCGAGCGuCGCCc -3'
miRNA:   3'- -UGGCGGCCGUUuUUG------------AGCUCGC-GUGG- -5'
12942 3' -54.8 NC_003387.1 + 3147 0.78 0.164546
Target:  5'- cACCGcCCGGCAg-----CGGGCGCACCu -3'
miRNA:   3'- -UGGC-GGCCGUuuuugaGCUCGCGUGG- -5'
12942 3' -54.8 NC_003387.1 + 9555 0.78 0.173814
Target:  5'- cGCCGCCGGgGugGAUUCGccagcacGCGCACCu -3'
miRNA:   3'- -UGGCGGCCgUuuUUGAGCu------CGCGUGG- -5'
12942 3' -54.8 NC_003387.1 + 24818 0.77 0.178621
Target:  5'- cGCCGCCGGUcAAGGCcgCGuGUGCGCUg -3'
miRNA:   3'- -UGGCGGCCGuUUUUGa-GCuCGCGUGG- -5'
12942 3' -54.8 NC_003387.1 + 6123 0.77 0.193755
Target:  5'- -aUGCgCGGCAGcgGCUUGAGgGCGCCa -3'
miRNA:   3'- ugGCG-GCCGUUuuUGAGCUCgCGUGG- -5'
12942 3' -54.8 NC_003387.1 + 10090 0.76 0.210001
Target:  5'- uAUUGCCGGCGGuuuGCUCGGGCuGCAUg -3'
miRNA:   3'- -UGGCGGCCGUUuu-UGAGCUCG-CGUGg -5'
12942 3' -54.8 NC_003387.1 + 47679 0.76 0.210001
Target:  5'- uACCGCUGaGCAccGACUCGcGCaGCGCCg -3'
miRNA:   3'- -UGGCGGC-CGUuuUUGAGCuCG-CGUGG- -5'
12942 3' -54.8 NC_003387.1 + 13890 0.76 0.210001
Target:  5'- uGCCGCCgGGCAGGuucGACgUCGGGUgGCGCCc -3'
miRNA:   3'- -UGGCGG-CCGUUU---UUG-AGCUCG-CGUGG- -5'
12942 3' -54.8 NC_003387.1 + 41250 0.76 0.210001
Target:  5'- cAUUGUCGGCcauGAACUUGAGCGCcCCg -3'
miRNA:   3'- -UGGCGGCCGuu-UUUGAGCUCGCGuGG- -5'
12942 3' -54.8 NC_003387.1 + 26936 0.76 0.221473
Target:  5'- gGCCGCCGaGCGgccgaGAAugUCGAGCGgguuGCCg -3'
miRNA:   3'- -UGGCGGC-CGU-----UUUugAGCUCGCg---UGG- -5'
12942 3' -54.8 NC_003387.1 + 33793 0.76 0.221473
Target:  5'- gACCGUCGcgagaagcuGCGuAGGgUCGAGCGCGCCg -3'
miRNA:   3'- -UGGCGGC---------CGUuUUUgAGCUCGCGUGG- -5'
12942 3' -54.8 NC_003387.1 + 16068 0.76 0.227406
Target:  5'- gGCgaGCCGGUGAugccACUCGGGgGCGCCg -3'
miRNA:   3'- -UGg-CGGCCGUUuu--UGAGCUCgCGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.