miRNA display CGI


Results 1 - 20 of 39 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12946 5' -59.9 NC_003387.1 + 11308 0.66 0.476429
Target:  5'- gGUAGCUCGaacagcgacucgugcUGCGCcUCGGuCGCCcGGc -3'
miRNA:   3'- -CGUCGAGC---------------ACGCGcAGCC-GUGGaCCa -5'
12946 5' -59.9 NC_003387.1 + 48046 0.66 0.472482
Target:  5'- aGCAcCUCGUcuugcuugGCgGCGUCGGCcGCUUGGc -3'
miRNA:   3'- -CGUcGAGCA--------CG-CGCAGCCG-UGGACCa -5'
12946 5' -59.9 NC_003387.1 + 51303 0.66 0.472482
Target:  5'- cCAGCUCGUcgGCGgCGGCGCCUc-- -3'
miRNA:   3'- cGUCGAGCAcgCGCaGCCGUGGAcca -5'
12946 5' -59.9 NC_003387.1 + 37265 0.66 0.472482
Target:  5'- uCGGCccgCGUG-GCGgucaaGGCGCCUGGc -3'
miRNA:   3'- cGUCGa--GCACgCGCag---CCGUGGACCa -5'
12946 5' -59.9 NC_003387.1 + 34975 0.66 0.472482
Target:  5'- cGCGGgcCUgGUGCcCGUCGGCaaGCCgGGUu -3'
miRNA:   3'- -CGUC--GAgCACGcGCAGCCG--UGGaCCA- -5'
12946 5' -59.9 NC_003387.1 + 52253 0.66 0.462687
Target:  5'- aGCAGCUCGcgccgGuCGcCGUCGGcCGCCgcGGc -3'
miRNA:   3'- -CGUCGAGCa----C-GC-GCAGCC-GUGGa-CCa -5'
12946 5' -59.9 NC_003387.1 + 47508 0.66 0.462687
Target:  5'- aGCAGCaUCGUGCG-GUacccgaGGCGCCa--- -3'
miRNA:   3'- -CGUCG-AGCACGCgCAg-----CCGUGGacca -5'
12946 5' -59.9 NC_003387.1 + 1130 0.66 0.453001
Target:  5'- -gGGCgcacgGUGUGC-UCGGCGCCUGcGUg -3'
miRNA:   3'- cgUCGag---CACGCGcAGCCGUGGAC-CA- -5'
12946 5' -59.9 NC_003387.1 + 44624 0.66 0.453001
Target:  5'- -gGGCUCGcccucggGCGgGUUGGCGCCgaccGGc -3'
miRNA:   3'- cgUCGAGCa------CGCgCAGCCGUGGa---CCa -5'
12946 5' -59.9 NC_003387.1 + 26699 0.66 0.453001
Target:  5'- cGCuGCUCGUcgacgccgucGUGCG-CGGCGCgagCUGGa -3'
miRNA:   3'- -CGuCGAGCA----------CGCGCaGCCGUG---GACCa -5'
12946 5' -59.9 NC_003387.1 + 25805 0.66 0.443425
Target:  5'- gGCGGcCUCGgugGCGgccUGcUCGGCGgCCUGGg -3'
miRNA:   3'- -CGUC-GAGCa--CGC---GC-AGCCGU-GGACCa -5'
12946 5' -59.9 NC_003387.1 + 18538 0.66 0.424623
Target:  5'- uGUGGCUUGUGCGCGagucguUCGaGCGCaaGGc -3'
miRNA:   3'- -CGUCGAGCACGCGC------AGC-CGUGgaCCa -5'
12946 5' -59.9 NC_003387.1 + 5468 0.66 0.424623
Target:  5'- uCAGCUCGgGCagauCGUucaagucgccCGGCACCUGGc -3'
miRNA:   3'- cGUCGAGCaCGc---GCA----------GCCGUGGACCa -5'
12946 5' -59.9 NC_003387.1 + 19708 0.66 0.421844
Target:  5'- cGCAGCUCGUGaaCGUgccgaauaucccaaUGGUGCCgGGUa -3'
miRNA:   3'- -CGUCGAGCACgcGCA--------------GCCGUGGaCCA- -5'
12946 5' -59.9 NC_003387.1 + 24092 0.67 0.415402
Target:  5'- --cGCU-GUGCgGUGUCGGCaucGCCUGGc -3'
miRNA:   3'- cguCGAgCACG-CGCAGCCG---UGGACCa -5'
12946 5' -59.9 NC_003387.1 + 2175 0.67 0.397334
Target:  5'- aGCAGCUCG-GCGCcUUGGuCGCCgacaugUGGc -3'
miRNA:   3'- -CGUCGAGCaCGCGcAGCC-GUGG------ACCa -5'
12946 5' -59.9 NC_003387.1 + 27910 0.67 0.397334
Target:  5'- cGCGGcCUUGaccgGCgGCGUgGGCGCCUcGGg -3'
miRNA:   3'- -CGUC-GAGCa---CG-CGCAgCCGUGGA-CCa -5'
12946 5' -59.9 NC_003387.1 + 25171 0.67 0.379778
Target:  5'- uCGGCUCG-GCGCGguggcccCGGCGCCg--- -3'
miRNA:   3'- cGUCGAGCaCGCGCa------GCCGUGGacca -5'
12946 5' -59.9 NC_003387.1 + 33845 0.67 0.379778
Target:  5'- aGCAGCUCGaugaUGCucGCGaCGaGCGCCUcGGg -3'
miRNA:   3'- -CGUCGAGC----ACG--CGCaGC-CGUGGA-CCa -5'
12946 5' -59.9 NC_003387.1 + 30430 0.67 0.371198
Target:  5'- gGCGGCUUGccggGUuuGUUGGCGCCcUGGUc -3'
miRNA:   3'- -CGUCGAGCa---CGcgCAGCCGUGG-ACCA- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.