miRNA display CGI


Results 1 - 20 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12957 5' -57.4 NC_003387.1 + 51305 0.67 0.562799
Target:  5'- aGCuCGUCGGCgGCGgcGC-CUCGcACa -3'
miRNA:   3'- gCG-GCAGCCG-CGCuaCGaGAGCaUGg -5'
12957 5' -57.4 NC_003387.1 + 51229 0.67 0.562799
Target:  5'- gGCCG-CGGCcUGGUGCUCgaCGUcgacGCCc -3'
miRNA:   3'- gCGGCaGCCGcGCUACGAGa-GCA----UGG- -5'
12957 5' -57.4 NC_003387.1 + 50247 0.66 0.648353
Target:  5'- gCGCCGUacgucagcgcCGG-GCGGUGCacCUCG-GCCu -3'
miRNA:   3'- -GCGGCA----------GCCgCGCUACGa-GAGCaUGG- -5'
12957 5' -57.4 NC_003387.1 + 48945 0.7 0.378117
Target:  5'- uGCUGgCGG-GCGGgcUGCUCggCGUACCa -3'
miRNA:   3'- gCGGCaGCCgCGCU--ACGAGa-GCAUGG- -5'
12957 5' -57.4 NC_003387.1 + 48914 0.66 0.605404
Target:  5'- uCGuuGUCGcGCuuGCGGUGUgcgcgUUCGUGCUc -3'
miRNA:   3'- -GCggCAGC-CG--CGCUACGa----GAGCAUGG- -5'
12957 5' -57.4 NC_003387.1 + 48834 0.69 0.451203
Target:  5'- uGCUGcUCGGCGCGAcGCacggCGUGCa -3'
miRNA:   3'- gCGGC-AGCCGCGCUaCGaga-GCAUGg -5'
12957 5' -57.4 NC_003387.1 + 48424 0.71 0.352836
Target:  5'- uGCCGggucgCGGUGCGcUGCUCgccCGcgGCCu -3'
miRNA:   3'- gCGGCa----GCCGCGCuACGAGa--GCa-UGG- -5'
12957 5' -57.4 NC_003387.1 + 48282 0.7 0.369556
Target:  5'- gGCCuUCGGCGCGG-GCUCggCGaacGCCu -3'
miRNA:   3'- gCGGcAGCCGCGCUaCGAGa-GCa--UGG- -5'
12957 5' -57.4 NC_003387.1 + 47285 0.69 0.422871
Target:  5'- cCGCCGUCGGCGCccucggucGAguUGUcCUCGgcggGCUu -3'
miRNA:   3'- -GCGGCAGCCGCG--------CU--ACGaGAGCa---UGG- -5'
12957 5' -57.4 NC_003387.1 + 46970 0.66 0.61613
Target:  5'- aGCuCGUCGGC-CGAgGCguucagCUCGU-CCu -3'
miRNA:   3'- gCG-GCAGCCGcGCUaCGa-----GAGCAuGG- -5'
12957 5' -57.4 NC_003387.1 + 46683 0.66 0.605404
Target:  5'- uGCC--CGGCGCccUGCcgcacCUCGUGCCg -3'
miRNA:   3'- gCGGcaGCCGCGcuACGa----GAGCAUGG- -5'
12957 5' -57.4 NC_003387.1 + 45542 0.67 0.552262
Target:  5'- gGCCGUgCGGCaagGCGAUccgccgccaGCUCgUCGgcacgGCCg -3'
miRNA:   3'- gCGGCA-GCCG---CGCUA---------CGAG-AGCa----UGG- -5'
12957 5' -57.4 NC_003387.1 + 45079 0.67 0.584025
Target:  5'- gGCCGUCcugGGC-CGGUGUUCggCG-GCCa -3'
miRNA:   3'- gCGGCAG---CCGcGCUACGAGa-GCaUGG- -5'
12957 5' -57.4 NC_003387.1 + 44611 0.66 0.61613
Target:  5'- aCGCCGUCGGgcCGUGgcGCgagCGUgugGCCc -3'
miRNA:   3'- -GCGGCAGCC--GCGCuaCGagaGCA---UGG- -5'
12957 5' -57.4 NC_003387.1 + 43842 0.68 0.500611
Target:  5'- gGCCGaggUCGGgGCGGUGCaccaGUGCUa -3'
miRNA:   3'- gCGGC---AGCCgCGCUACGagagCAUGG- -5'
12957 5' -57.4 NC_003387.1 + 43700 0.67 0.552262
Target:  5'- uCGCCGaCGGCGCccgccaGGUGCUCgaCGgcgGCa -3'
miRNA:   3'- -GCGGCaGCCGCG------CUACGAGa-GCa--UGg -5'
12957 5' -57.4 NC_003387.1 + 42689 0.72 0.305947
Target:  5'- gCGCCcUCGGCGCGcuucgGCUCgUCGUcgucgucgcccgGCCg -3'
miRNA:   3'- -GCGGcAGCCGCGCua---CGAG-AGCA------------UGG- -5'
12957 5' -57.4 NC_003387.1 + 41756 0.7 0.369556
Target:  5'- gGCCG-CGGUGUGGUGCgacCUCGacgucaaGCCg -3'
miRNA:   3'- gCGGCaGCCGCGCUACGa--GAGCa------UGG- -5'
12957 5' -57.4 NC_003387.1 + 41507 0.68 0.510783
Target:  5'- uCGCCGUCGGCccaCGccUGCaUCUUGU-CCg -3'
miRNA:   3'- -GCGGCAGCCGc--GCu-ACG-AGAGCAuGG- -5'
12957 5' -57.4 NC_003387.1 + 40840 0.68 0.510783
Target:  5'- gCGCCGaUCGuGCGCGAcGCgCUC--ACCg -3'
miRNA:   3'- -GCGGC-AGC-CGCGCUaCGaGAGcaUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.