miRNA display CGI


Results 1 - 20 of 133 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12960 3' -63.1 NC_003387.1 + 40289 0.66 0.354289
Target:  5'- gAACCucGGCaGCGcccuaaucagcucccACAGCGGCGCaCCGg -3'
miRNA:   3'- gUUGG--CCGcCGC---------------UGUCGCCGUGgGGC- -5'
12960 3' -63.1 NC_003387.1 + 35686 0.66 0.351089
Target:  5'- aCGACgccCGGCGAgGGCGGCAgCCgCCGc -3'
miRNA:   3'- -GUUGgccGCCGCUgUCGCCGU-GG-GGC- -5'
12960 3' -63.1 NC_003387.1 + 50987 0.66 0.348702
Target:  5'- gCGGCCGGgGGCGuuuucguuugcuguGCAcGCGGCAUgCaCGc -3'
miRNA:   3'- -GUUGGCCgCCGC--------------UGU-CGCCGUGgG-GC- -5'
12960 3' -63.1 NC_003387.1 + 6555 0.66 0.346327
Target:  5'- gAGCCGGgacaCGGCGcaccaACAcauagaacgacgaccGCGGCACCUCa -3'
miRNA:   3'- gUUGGCC----GCCGC-----UGU---------------CGCCGUGGGGc -5'
12960 3' -63.1 NC_003387.1 + 50540 0.66 0.343178
Target:  5'- gAGCCcGCGGUGGCucgGGgGGCGCUuuGu -3'
miRNA:   3'- gUUGGcCGCCGCUG---UCgCCGUGGggC- -5'
12960 3' -63.1 NC_003387.1 + 10667 0.66 0.343178
Target:  5'- uCGACgCGGCuGCGACcaCGGCcGCCUCGg -3'
miRNA:   3'- -GUUG-GCCGcCGCUGucGCCG-UGGGGC- -5'
12960 3' -63.1 NC_003387.1 + 51781 0.66 0.343178
Target:  5'- cCGACUGGUGGCug-GGCGucgauCGCCCCGa -3'
miRNA:   3'- -GUUGGCCGCCGcugUCGCc----GUGGGGC- -5'
12960 3' -63.1 NC_003387.1 + 24866 0.66 0.343178
Target:  5'- uGGCUGGCucgaccucgGGCGGUGGCuGCGCCCUGu -3'
miRNA:   3'- gUUGGCCG---------CCGCUGUCGcCGUGGGGC- -5'
12960 3' -63.1 NC_003387.1 + 44019 0.66 0.343178
Target:  5'- uCGAgCGGCucgucgacgucGGuCGGCAGCGGCGUgCCGa -3'
miRNA:   3'- -GUUgGCCG-----------CC-GCUGUCGCCGUGgGGC- -5'
12960 3' -63.1 NC_003387.1 + 18402 0.66 0.343178
Target:  5'- gCGACgGGuCGGCcgcgGGCAGCgcgGGCugCUCGg -3'
miRNA:   3'- -GUUGgCC-GCCG----CUGUCG---CCGugGGGC- -5'
12960 3' -63.1 NC_003387.1 + 42269 0.66 0.343178
Target:  5'- -cACCGGCGacCGACAGCGcGCugUCg- -3'
miRNA:   3'- guUGGCCGCc-GCUGUCGC-CGugGGgc -5'
12960 3' -63.1 NC_003387.1 + 25171 0.66 0.335397
Target:  5'- uCGGCuCGGCgcGGUGGCccCGGCGCCgCCGc -3'
miRNA:   3'- -GUUG-GCCG--CCGCUGucGCCGUGG-GGC- -5'
12960 3' -63.1 NC_003387.1 + 37594 0.66 0.335397
Target:  5'- gCAAUCGGgucGCGcACAGggucaGGCGCCCCGu -3'
miRNA:   3'- -GUUGGCCgc-CGC-UGUCg----CCGUGGGGC- -5'
12960 3' -63.1 NC_003387.1 + 5689 0.66 0.335397
Target:  5'- gCAGCaaGGUGGCGGCGGUcaagGGCguGCCCgCGu -3'
miRNA:   3'- -GUUGg-CCGCCGCUGUCG----CCG--UGGG-GC- -5'
12960 3' -63.1 NC_003387.1 + 2479 0.66 0.335397
Target:  5'- --cCCGGCGcUGACGuaCGGCGCCUCGu -3'
miRNA:   3'- guuGGCCGCcGCUGUc-GCCGUGGGGC- -5'
12960 3' -63.1 NC_003387.1 + 26588 0.66 0.327745
Target:  5'- aGGCCGcGCGaGCGGCGaCGGaCGCgCCGa -3'
miRNA:   3'- gUUGGC-CGC-CGCUGUcGCC-GUGgGGC- -5'
12960 3' -63.1 NC_003387.1 + 1514 0.66 0.327745
Target:  5'- cCAGCCGGUcgugaagucGG-GGCGGUGGCACgaCCUGu -3'
miRNA:   3'- -GUUGGCCG---------CCgCUGUCGCCGUG--GGGC- -5'
12960 3' -63.1 NC_003387.1 + 3829 0.66 0.320223
Target:  5'- aCGAUCgucagGGCGGCGcgguaGGCGGCGCCgaCGa -3'
miRNA:   3'- -GUUGG-----CCGCCGCug---UCGCCGUGGg-GC- -5'
12960 3' -63.1 NC_003387.1 + 22685 0.66 0.320223
Target:  5'- uGGgCGGUGuCGACGGCGGCGCuggcggCCUGg -3'
miRNA:   3'- gUUgGCCGCcGCUGUCGCCGUG------GGGC- -5'
12960 3' -63.1 NC_003387.1 + 36840 0.66 0.320223
Target:  5'- --cCCGGCGGCGGCGcuGUGacCGCCCUc -3'
miRNA:   3'- guuGGCCGCCGCUGU--CGCc-GUGGGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.