miRNA display CGI


Results 1 - 20 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12980 3' -54.8 NC_003387.1 + 49386 0.66 0.771933
Target:  5'- -cGCGCCaaaCGAGCGGgccucggUGUCAcGCCa -3'
miRNA:   3'- cuUGUGGg--GCUCGCCaca----GCAGU-UGG- -5'
12980 3' -54.8 NC_003387.1 + 35794 0.66 0.771933
Target:  5'- ---aGCCCCGAGCuGUGccucggcgcCGUCGGCg -3'
miRNA:   3'- cuugUGGGGCUCGcCACa--------GCAGUUGg -5'
12980 3' -54.8 NC_003387.1 + 31920 0.66 0.771933
Target:  5'- ---uGCUCCGAGCGGUGg---CuACCg -3'
miRNA:   3'- cuugUGGGGCUCGCCACagcaGuUGG- -5'
12980 3' -54.8 NC_003387.1 + 48818 0.66 0.771933
Target:  5'- uAGCACCCa-GGCGGUcaggGUCGggCAGCg -3'
miRNA:   3'- cUUGUGGGgcUCGCCA----CAGCa-GUUGg -5'
12980 3' -54.8 NC_003387.1 + 18183 0.66 0.771933
Target:  5'- cGACGuCgUCGAGCGG-GUCGacgggCAGCCc -3'
miRNA:   3'- cUUGU-GgGGCUCGCCaCAGCa----GUUGG- -5'
12980 3' -54.8 NC_003387.1 + 31716 0.66 0.771933
Target:  5'- uGACAgCCCG-GCGcUGUCGcCGACg -3'
miRNA:   3'- cUUGUgGGGCuCGCcACAGCaGUUGg -5'
12980 3' -54.8 NC_003387.1 + 22966 0.66 0.761802
Target:  5'- gGGGCGCCCCG-GUcaucGUGUCGggCGgcGCCg -3'
miRNA:   3'- -CUUGUGGGGCuCGc---CACAGCa-GU--UGG- -5'
12980 3' -54.8 NC_003387.1 + 27930 0.66 0.761801
Target:  5'- uGGGCGCCUCGGGgGGggcucgGUCGgggcgcUCGGCg -3'
miRNA:   3'- -CUUGUGGGGCUCgCCa-----CAGC------AGUUGg -5'
12980 3' -54.8 NC_003387.1 + 1597 0.66 0.760781
Target:  5'- -cGCGCCcuggcauguucggCCGGGCGcGUGUgGgCAGCCu -3'
miRNA:   3'- cuUGUGG-------------GGCUCGC-CACAgCaGUUGG- -5'
12980 3' -54.8 NC_003387.1 + 32180 0.66 0.751538
Target:  5'- cGAGCugACCgCCGAGCuGcgcGUCGUC-ACCg -3'
miRNA:   3'- -CUUG--UGG-GGCUCGcCa--CAGCAGuUGG- -5'
12980 3' -54.8 NC_003387.1 + 11418 0.66 0.751538
Target:  5'- ---gGCCCCGAgGUGcUGUCGUCGguGCUc -3'
miRNA:   3'- cuugUGGGGCU-CGCcACAGCAGU--UGG- -5'
12980 3' -54.8 NC_003387.1 + 38677 0.66 0.751538
Target:  5'- --gUACCUCGAcgGCGGUGUCGagugaagcgCAGCg -3'
miRNA:   3'- cuuGUGGGGCU--CGCCACAGCa--------GUUGg -5'
12980 3' -54.8 NC_003387.1 + 4465 0.66 0.751537
Target:  5'- aGAACAgCCCGAGCuGcUGgccgCGgcCGACCg -3'
miRNA:   3'- -CUUGUgGGGCUCGcC-ACa---GCa-GUUGG- -5'
12980 3' -54.8 NC_003387.1 + 23327 0.66 0.751537
Target:  5'- -uGCGCCCggCGGGCGaGaucgagGUCGUCAccggcGCCg -3'
miRNA:   3'- cuUGUGGG--GCUCGC-Ca-----CAGCAGU-----UGG- -5'
12980 3' -54.8 NC_003387.1 + 40510 0.66 0.751537
Target:  5'- gGGGCACgCCGGGaaugucgggaaCGGUGaacgucaucUUGUCGGCCa -3'
miRNA:   3'- -CUUGUGgGGCUC-----------GCCAC---------AGCAGUUGG- -5'
12980 3' -54.8 NC_003387.1 + 50245 0.66 0.751537
Target:  5'- aGGCGCCguacgucagcgCCGGGCGGUGcaccUCGGCCu -3'
miRNA:   3'- cUUGUGG-----------GGCUCGCCACagc-AGUUGG- -5'
12980 3' -54.8 NC_003387.1 + 24087 0.66 0.741153
Target:  5'- uGugACgCUGuGCGGUGUCGgCAucGCCu -3'
miRNA:   3'- cUugUGgGGCuCGCCACAGCaGU--UGG- -5'
12980 3' -54.8 NC_003387.1 + 23904 0.66 0.741153
Target:  5'- -uGCGCgCCGAGgGGcugaacGUCGUCGAgCu -3'
miRNA:   3'- cuUGUGgGGCUCgCCa-----CAGCAGUUgG- -5'
12980 3' -54.8 NC_003387.1 + 9020 0.66 0.741152
Target:  5'- cGAGCACCUggCGGGCGccGUCGgCGAUCc -3'
miRNA:   3'- -CUUGUGGG--GCUCGCcaCAGCaGUUGG- -5'
12980 3' -54.8 NC_003387.1 + 45316 0.66 0.730658
Target:  5'- ---aACCuuGuGCGGUGUCGggaacaUCAGCa -3'
miRNA:   3'- cuugUGGggCuCGCCACAGC------AGUUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.