miRNA display CGI


Results 1 - 20 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12980 5' -63.2 NC_003387.1 + 1968 0.66 0.363339
Target:  5'- cCGGGCagcgccagcuUGACCUgaaaCGCACgGCgUCGAGGu -3'
miRNA:   3'- -GCUCG----------ACUGGG----GCGUGgCGgGGCUCC- -5'
12980 5' -63.2 NC_003387.1 + 28024 0.66 0.363339
Target:  5'- gCGAGCuUGGCgUCGUACUGCCggUCGGGa -3'
miRNA:   3'- -GCUCG-ACUGgGGCGUGGCGG--GGCUCc -5'
12980 5' -63.2 NC_003387.1 + 27135 0.66 0.36253
Target:  5'- uCGAgGCcGugCCCGCcggggucGgCGCCgCCGGGGa -3'
miRNA:   3'- -GCU-CGaCugGGGCG-------UgGCGG-GGCUCC- -5'
12980 5' -63.2 NC_003387.1 + 27917 0.66 0.36253
Target:  5'- cCGAGCUG-CUgCGCcaggucgGCCGCgaCCCGAGcGg -3'
miRNA:   3'- -GCUCGACuGGgGCG-------UGGCG--GGGCUC-C- -5'
12980 5' -63.2 NC_003387.1 + 23822 0.66 0.355304
Target:  5'- uCGGGCggUGGCCCgGCgcccgcgccuaaGCCGCCgcagUCGGGGc -3'
miRNA:   3'- -GCUCG--ACUGGGgCG------------UGGCGG----GGCUCC- -5'
12980 5' -63.2 NC_003387.1 + 49304 0.66 0.355304
Target:  5'- cCGAGCacGCCgaggGCACgGCCCCGAGc -3'
miRNA:   3'- -GCUCGacUGGgg--CGUGgCGGGGCUCc -5'
12980 5' -63.2 NC_003387.1 + 27884 0.66 0.355304
Target:  5'- uCGAGCagGAgCCCGgccaGCCGC-CCGAGu -3'
miRNA:   3'- -GCUCGa-CUgGGGCg---UGGCGgGGCUCc -5'
12980 5' -63.2 NC_003387.1 + 31288 0.66 0.355304
Target:  5'- -uAGUUGACCagccguagcugCUGCGCCggGCCgCCGGGGg -3'
miRNA:   3'- gcUCGACUGG-----------GGCGUGG--CGG-GGCUCC- -5'
12980 5' -63.2 NC_003387.1 + 24404 0.66 0.355304
Target:  5'- -aGGCUGAUCUgcaCGC-CCGCgauaCCGAGGg -3'
miRNA:   3'- gcUCGACUGGG---GCGuGGCGg---GGCUCC- -5'
12980 5' -63.2 NC_003387.1 + 34977 0.66 0.355304
Target:  5'- uGAGCgguguggccccuggcGGCCCggccgggccggggCGCACCGCCUCGAa- -3'
miRNA:   3'- gCUCGa--------------CUGGG-------------GCGUGGCGGGGCUcc -5'
12980 5' -63.2 NC_003387.1 + 16140 0.66 0.355304
Target:  5'- -aAGCUG-CUggGCACCGCCCCGucGa -3'
miRNA:   3'- gcUCGACuGGggCGUGGCGGGGCucC- -5'
12980 5' -63.2 NC_003387.1 + 32179 0.66 0.347394
Target:  5'- aCGAGCUGACCgCCgaGCugCGCgucgucaCCGAc- -3'
miRNA:   3'- -GCUCGACUGG-GG--CGugGCGg------GGCUcc -5'
12980 5' -63.2 NC_003387.1 + 30130 0.66 0.347394
Target:  5'- uGAGCUucGACCgUG-GCCGCaCCGAGGc -3'
miRNA:   3'- gCUCGA--CUGGgGCgUGGCGgGGCUCC- -5'
12980 5' -63.2 NC_003387.1 + 12156 0.66 0.347394
Target:  5'- cCGAGCUucugcagcGCCUCGaa-CGCCUCGGGGg -3'
miRNA:   3'- -GCUCGAc-------UGGGGCgugGCGGGGCUCC- -5'
12980 5' -63.2 NC_003387.1 + 39564 0.66 0.345046
Target:  5'- gCGAGcCUGACCUcgacggccuguucgCGCugCGCaCCagCGAGGc -3'
miRNA:   3'- -GCUC-GACUGGG--------------GCGugGCG-GG--GCUCC- -5'
12980 5' -63.2 NC_003387.1 + 19855 0.66 0.342708
Target:  5'- uCGAGCUGGCagucggcgcagucggCgacgcggaaCCGCcCCGCCCCGcGGu -3'
miRNA:   3'- -GCUCGACUG---------------G---------GGCGuGGCGGGGCuCC- -5'
12980 5' -63.2 NC_003387.1 + 45536 0.66 0.341932
Target:  5'- uGuGCUGGCCgUGCggcaaggcgauccGCCGCCagcucgucggcacggCCGAGGa -3'
miRNA:   3'- gCuCGACUGGgGCG-------------UGGCGG---------------GGCUCC- -5'
12980 5' -63.2 NC_003387.1 + 33428 0.66 0.339611
Target:  5'- cCGAGCUGGa-UCGgGCUG-CCCGAGGc -3'
miRNA:   3'- -GCUCGACUggGGCgUGGCgGGGCUCC- -5'
12980 5' -63.2 NC_003387.1 + 51335 0.66 0.339611
Target:  5'- uCGAGCgcGACCCCGaC-CCGCUgagcgCCGAcGGc -3'
miRNA:   3'- -GCUCGa-CUGGGGC-GuGGCGG-----GGCU-CC- -5'
12980 5' -63.2 NC_003387.1 + 42552 0.66 0.339611
Target:  5'- cCGAGCUGGCgagcgagauuggCgCGCACCuGCaCCUGuGGg -3'
miRNA:   3'- -GCUCGACUG------------GgGCGUGG-CG-GGGCuCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.