miRNA display CGI


Results 1 - 20 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12984 3' -63.2 NC_003387.1 + 2547 0.66 0.346327
Target:  5'- cGCGGUCGCCGCggcagauccucgccgUGUaCGCCGAcccGuCGGUc -3'
miRNA:   3'- -CGCUAGCGGCG---------------ACG-GCGGCUc--C-GCCA- -5'
12984 3' -63.2 NC_003387.1 + 43451 0.66 0.346327
Target:  5'- -aGGUCaaGCUGCUGaccggcggcgacgucCUGUCGGGGCGGUu -3'
miRNA:   3'- cgCUAG--CGGCGAC---------------GGCGGCUCCGCCA- -5'
12984 3' -63.2 NC_003387.1 + 34250 0.66 0.343178
Target:  5'- gGCGcUCGaCCgGCUGaUCGCCGAGuCGGg -3'
miRNA:   3'- -CGCuAGC-GG-CGAC-GGCGGCUCcGCCa -5'
12984 3' -63.2 NC_003387.1 + 40444 0.66 0.343178
Target:  5'- cGCuGAUCcgGCCGCcgGUCGCCaGGcGCGGg -3'
miRNA:   3'- -CG-CUAG--CGGCGa-CGGCGGcUC-CGCCa -5'
12984 3' -63.2 NC_003387.1 + 2298 0.66 0.343178
Target:  5'- gGCGuaCGCCGaggcgacgauCUGCCGCCcGAcguacagcucGGCGGUg -3'
miRNA:   3'- -CGCuaGCGGC----------GACGGCGG-CU----------CCGCCA- -5'
12984 3' -63.2 NC_003387.1 + 43331 0.66 0.343178
Target:  5'- gGCGAUCGUC-UUGcCCGCCucGGgGGUc -3'
miRNA:   3'- -CGCUAGCGGcGAC-GGCGGcuCCgCCA- -5'
12984 3' -63.2 NC_003387.1 + 15351 0.66 0.342394
Target:  5'- aGCGGggCGCCGCcgcccgacaggUGCCGCaGAuagcgcagcccgcGGCGGg -3'
miRNA:   3'- -CGCUa-GCGGCG-----------ACGGCGgCU-------------CCGCCa -5'
12984 3' -63.2 NC_003387.1 + 27811 0.66 0.335397
Target:  5'- gGCGGUCacaacgcacuuGCCGgUGCCGUCGGuGGacaGGg -3'
miRNA:   3'- -CGCUAG-----------CGGCgACGGCGGCU-CCg--CCa -5'
12984 3' -63.2 NC_003387.1 + 47184 0.66 0.335397
Target:  5'- gGUGGUCGCCcucgggGCUcaggugGCCGCCGGugucggcauuguGGUGGg -3'
miRNA:   3'- -CGCUAGCGG------CGA------CGGCGGCU------------CCGCCa -5'
12984 3' -63.2 NC_003387.1 + 24631 0.66 0.334625
Target:  5'- gGCGAcccgacgcaccUCGCC-CUGCUGCgCGAGGUcgccagcgccgagGGUg -3'
miRNA:   3'- -CGCU-----------AGCGGcGACGGCG-GCUCCG-------------CCA- -5'
12984 3' -63.2 NC_003387.1 + 126 0.66 0.327745
Target:  5'- gGCGuguUUGCUgaGCUcGCuCGCCG-GGCGGUu -3'
miRNA:   3'- -CGCu--AGCGG--CGA-CG-GCGGCuCCGCCA- -5'
12984 3' -63.2 NC_003387.1 + 27392 0.66 0.327745
Target:  5'- cGgGAauaUCGCCGggaUGCCGuuGGGGCcGUa -3'
miRNA:   3'- -CgCU---AGCGGCg--ACGGCggCUCCGcCA- -5'
12984 3' -63.2 NC_003387.1 + 23357 0.66 0.327745
Target:  5'- cCGG-CGCCGCUgacggucagGUCGCCGAGGauGa -3'
miRNA:   3'- cGCUaGCGGCGA---------CGGCGGCUCCgcCa -5'
12984 3' -63.2 NC_003387.1 + 24263 0.66 0.327745
Target:  5'- aGUGcugCGCCGCgaucUGCCGCCGccucGGCGu- -3'
miRNA:   3'- -CGCua-GCGGCG----ACGGCGGCu---CCGCca -5'
12984 3' -63.2 NC_003387.1 + 46688 0.66 0.327745
Target:  5'- gGCGcccUGCCGCaccucgUGCCGCUGgacgccaagcAGGCGGg -3'
miRNA:   3'- -CGCua-GCGGCG------ACGGCGGC----------UCCGCCa -5'
12984 3' -63.2 NC_003387.1 + 42328 0.66 0.320223
Target:  5'- cCGAgCGCCGaaccGUCGCCGAGguuGCGGg -3'
miRNA:   3'- cGCUaGCGGCga--CGGCGGCUC---CGCCa -5'
12984 3' -63.2 NC_003387.1 + 39602 0.66 0.320223
Target:  5'- aGCGAg-GCCGaCgagugGaUCGCCGAGGUGGc -3'
miRNA:   3'- -CGCUagCGGC-Ga----C-GGCGGCUCCGCCa -5'
12984 3' -63.2 NC_003387.1 + 48090 0.66 0.312831
Target:  5'- aCGggUGgCGCUGCCGCUGcgcccGCGGUg -3'
miRNA:   3'- cGCuaGCgGCGACGGCGGCuc---CGCCA- -5'
12984 3' -63.2 NC_003387.1 + 27161 0.66 0.312831
Target:  5'- aGCGcGUCGCgaaGCUGCUGCCccucGGCGuGUg -3'
miRNA:   3'- -CGC-UAGCGg--CGACGGCGGcu--CCGC-CA- -5'
12984 3' -63.2 NC_003387.1 + 33799 0.66 0.308458
Target:  5'- cGCGAgaaGCUGCguagggucgagcgcGCCGCCGAcGGCGu- -3'
miRNA:   3'- -CGCUag-CGGCGa-------------CGGCGGCU-CCGCca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.