Results 1 - 20 of 82 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12988 | 5' | -64.9 | NC_003387.1 | + | 20453 | 0.66 | 0.283316 |
Target: 5'- cGCCCCCacgccuugucgGCCU-CGGCGaCGGCCaGGcGGu -3' miRNA: 3'- -CGGGGG-----------UGGAcGCCGC-GUCGGgCU-CC- -5' |
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12988 | 5' | -64.9 | NC_003387.1 | + | 51403 | 0.66 | 0.282646 |
Target: 5'- gGCCggugaCCggcgagcGCCUGCGGCGCcGCCuCGAa- -3' miRNA: 3'- -CGGg----GG-------UGGACGCCGCGuCGG-GCUcc -5' |
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12988 | 5' | -64.9 | NC_003387.1 | + | 24280 | 0.66 | 0.283316 |
Target: 5'- uGCCgCCGCCU-CGGCGUGcGCgCCGAu- -3' miRNA: 3'- -CGGgGGUGGAcGCCGCGU-CG-GGCUcc -5' |
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12988 | 5' | -64.9 | NC_003387.1 | + | 42821 | 0.66 | 0.276679 |
Target: 5'- aGCCCCgACg-GCGGCgaggcgaucaugGCGGCgaUCGAGGu -3' miRNA: 3'- -CGGGGgUGgaCGCCG------------CGUCG--GGCUCC- -5' |
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12988 | 5' | -64.9 | NC_003387.1 | + | 17175 | 0.66 | 0.270168 |
Target: 5'- gGUgCgCCGCCUggGCGGCGaCGGCgcgaaaguggCCGAGGc -3' miRNA: 3'- -CGgG-GGUGGA--CGCCGC-GUCG----------GGCUCC- -5' |
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12988 | 5' | -64.9 | NC_003387.1 | + | 638 | 0.66 | 0.257515 |
Target: 5'- cGUCgCCGCC-GCGGCaGCGacGCCCGAu- -3' miRNA: 3'- -CGGgGGUGGaCGCCG-CGU--CGGGCUcc -5' |
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12988 | 5' | -64.9 | NC_003387.1 | + | 48073 | 0.66 | 0.283316 |
Target: 5'- cGCCCCgaagCGCCUcgacggGUGGCGCugccgcugcGCCCGcGGu -3' miRNA: 3'- -CGGGG----GUGGA------CGCCGCGu--------CGGGCuCC- -5' |
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12988 | 5' | -64.9 | NC_003387.1 | + | 3663 | 0.66 | 0.283316 |
Target: 5'- uGCCCCgGCUgaGCGGCcugaccgAGgCCGAGGg -3' miRNA: 3'- -CGGGGgUGGa-CGCCGcg-----UCgGGCUCC- -5' |
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12988 | 5' | -64.9 | NC_003387.1 | + | 34625 | 0.66 | 0.26378 |
Target: 5'- gGCCgCCUACCU---GCGCAGCCuCGGGc -3' miRNA: 3'- -CGG-GGGUGGAcgcCGCGUCGG-GCUCc -5' |
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12988 | 5' | -64.9 | NC_003387.1 | + | 44434 | 0.66 | 0.283316 |
Target: 5'- uGCUgCCCGCCgacGCgcacgaGGCGCuGCgCGAGGc -3' miRNA: 3'- -CGG-GGGUGGa--CG------CCGCGuCGgGCUCC- -5' |
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12988 | 5' | -64.9 | NC_003387.1 | + | 50782 | 0.66 | 0.257515 |
Target: 5'- aGCCCCaacCGCCUGCGuCGCGGaUCGGGc -3' miRNA: 3'- -CGGGG---GUGGACGCcGCGUCgGGCUCc -5' |
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12988 | 5' | -64.9 | NC_003387.1 | + | 46810 | 0.66 | 0.283316 |
Target: 5'- aGCCCCCGgCgcguaaGCGGCGCAaugcuucuGCCgCGGc- -3' miRNA: 3'- -CGGGGGUgGa-----CGCCGCGU--------CGG-GCUcc -5' |
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12988 | 5' | -64.9 | NC_003387.1 | + | 27533 | 0.66 | 0.283316 |
Target: 5'- -gCgCUGCC-GCGGCgGCGGCgCCGGGGc -3' miRNA: 3'- cgGgGGUGGaCGCCG-CGUCG-GGCUCC- -5' |
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12988 | 5' | -64.9 | NC_003387.1 | + | 28879 | 0.66 | 0.281312 |
Target: 5'- gGCCCCgACUgcgGCggcuuaGGCGCGggcgccgggccaccGCCCGAGc -3' miRNA: 3'- -CGGGGgUGGa--CG------CCGCGU--------------CGGGCUCc -5' |
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12988 | 5' | -64.9 | NC_003387.1 | + | 19892 | 0.66 | 0.257515 |
Target: 5'- -gCCCCGCCccGCGGUGCGggcuGCgCUGAGa -3' miRNA: 3'- cgGGGGUGGa-CGCCGCGU----CG-GGCUCc -5' |
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12988 | 5' | -64.9 | NC_003387.1 | + | 50534 | 0.67 | 0.217024 |
Target: 5'- aCCCCUgaGCCcGCGGU--GGCUCGGGGg -3' miRNA: 3'- cGGGGG--UGGaCGCCGcgUCGGGCUCC- -5' |
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12988 | 5' | -64.9 | NC_003387.1 | + | 25932 | 0.67 | 0.222457 |
Target: 5'- cGCCCCaCACCcacaUGCuGCGguGCCUucGGc -3' miRNA: 3'- -CGGGG-GUGG----ACGcCGCguCGGGcuCC- -5' |
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12988 | 5' | -64.9 | NC_003387.1 | + | 43504 | 0.67 | 0.222457 |
Target: 5'- cGCCCCCACCaggaaagcgcGCGG-GguGCCggucugUGAGGu -3' miRNA: 3'- -CGGGGGUGGa---------CGCCgCguCGG------GCUCC- -5' |
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12988 | 5' | -64.9 | NC_003387.1 | + | 7732 | 0.67 | 0.227444 |
Target: 5'- uGCCUcacagcaCCGCCUcgGCGGCagcggcgaucGCGGCCUGAGc -3' miRNA: 3'- -CGGG-------GGUGGA--CGCCG----------CGUCGGGCUCc -5' |
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12988 | 5' | -64.9 | NC_003387.1 | + | 5338 | 0.67 | 0.228004 |
Target: 5'- uGCCCCgCGCUUGCGGUGuCGGUgUUGAGc -3' miRNA: 3'- -CGGGG-GUGGACGCCGC-GUCG-GGCUCc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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