miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12988 5' -64.9 NC_003387.1 + 46883 1.04 0.000291
Target:  5'- cGCCCCCACCUGCGGCGCAGCCCGGGu -3'
miRNA:   3'- -CGGGGGUGGACGCCGCGUCGGGCUCc -5'
12988 5' -64.9 NC_003387.1 + 48198 0.78 0.036643
Target:  5'- uGCCCgCACCgGCGGCgGCGGC-CGAGGu -3'
miRNA:   3'- -CGGGgGUGGaCGCCG-CGUCGgGCUCC- -5'
12988 5' -64.9 NC_003387.1 + 42425 0.76 0.050934
Target:  5'- cGUCCUgGCCUGC-GCGCugagcGCCCGAGGu -3'
miRNA:   3'- -CGGGGgUGGACGcCGCGu----CGGGCUCC- -5'
12988 5' -64.9 NC_003387.1 + 13127 0.74 0.06687
Target:  5'- aGCa--CACC-GCGGCGCAGCuuGAGGa -3'
miRNA:   3'- -CGgggGUGGaCGCCGCGUCGggCUCC- -5'
12988 5' -64.9 NC_003387.1 + 21691 0.73 0.078637
Target:  5'- cGCCCUgGCCgccucgGCGaGCGCGGCCCGc-- -3'
miRNA:   3'- -CGGGGgUGGa-----CGC-CGCGUCGGGCucc -5'
12988 5' -64.9 NC_003387.1 + 38550 0.73 0.09237
Target:  5'- cGCCCUCacGCCcGCGGCcCGGCCCggcGAGGu -3'
miRNA:   3'- -CGGGGG--UGGaCGCCGcGUCGGG---CUCC- -5'
12988 5' -64.9 NC_003387.1 + 9600 0.72 0.100063
Target:  5'- cGCCCaCCACC-GCGGCGCcGCgCCGucGc -3'
miRNA:   3'- -CGGG-GGUGGaCGCCGCGuCG-GGCucC- -5'
12988 5' -64.9 NC_003387.1 + 48303 0.72 0.102486
Target:  5'- cGCCgCCCGCCUcgacgaaaucgagGCGGCGCgcgAGCgCGAGu -3'
miRNA:   3'- -CGG-GGGUGGA-------------CGCCGCG---UCGgGCUCc -5'
12988 5' -64.9 NC_003387.1 + 8082 0.72 0.102759
Target:  5'- aCCCgCUGCCgGuCGGCGCcaacccGCCCGAGGg -3'
miRNA:   3'- cGGG-GGUGGaC-GCCGCGu-----CGGGCUCC- -5'
12988 5' -64.9 NC_003387.1 + 28910 0.72 0.105523
Target:  5'- cGCCCUCACguauCUGCuGCGCGGCggCGAGGu -3'
miRNA:   3'- -CGGGGGUG----GACGcCGCGUCGg-GCUCC- -5'
12988 5' -64.9 NC_003387.1 + 8263 0.71 0.11424
Target:  5'- gGCCaaCCACCgcaaGGUGCAcacGCCCGAGGg -3'
miRNA:   3'- -CGGg-GGUGGacg-CCGCGU---CGGGCUCC- -5'
12988 5' -64.9 NC_003387.1 + 40311 0.71 0.117293
Target:  5'- aGCUCCCACa-GCGGCGCA-CCgGAGu -3'
miRNA:   3'- -CGGGGGUGgaCGCCGCGUcGGgCUCc -5'
12988 5' -64.9 NC_003387.1 + 20113 0.71 0.117293
Target:  5'- cGCCCCC----GCGGCG-AGCCCGAGc -3'
miRNA:   3'- -CGGGGGuggaCGCCGCgUCGGGCUCc -5'
12988 5' -64.9 NC_003387.1 + 3530 0.71 0.120421
Target:  5'- uGCCCCCGCCgccgccccagGCGGCuGCucaGGCgcucaaCGAGGg -3'
miRNA:   3'- -CGGGGGUGGa---------CGCCG-CG---UCGg-----GCUCC- -5'
12988 5' -64.9 NC_003387.1 + 6122 0.71 0.126912
Target:  5'- aCCaCgCACCUGcCGGUGCuggcgacccuGCCCGAGGc -3'
miRNA:   3'- cGG-GgGUGGAC-GCCGCGu---------CGGGCUCC- -5'
12988 5' -64.9 NC_003387.1 + 27913 0.71 0.130278
Target:  5'- gGCCUUgACCgGCGGCGUgggcGCCuCGGGGg -3'
miRNA:   3'- -CGGGGgUGGaCGCCGCGu---CGG-GCUCC- -5'
12988 5' -64.9 NC_003387.1 + 42042 0.7 0.1369
Target:  5'- gGCCaCCGCCgagGCGGCcguggucGCAGCCgcguCGAGGc -3'
miRNA:   3'- -CGGgGGUGGa--CGCCG-------CGUCGG----GCUCC- -5'
12988 5' -64.9 NC_003387.1 + 31115 0.7 0.137257
Target:  5'- aCCCCCgagcGCCagGUgGGCGCcGCCCGAGa -3'
miRNA:   3'- cGGGGG----UGGa-CG-CCGCGuCGGGCUCc -5'
12988 5' -64.9 NC_003387.1 + 21459 0.7 0.140874
Target:  5'- -aCCCgGCCccGCuGGCGCAGCCCGcgccGGu -3'
miRNA:   3'- cgGGGgUGGa-CG-CCGCGUCGGGCu---CC- -5'
12988 5' -64.9 NC_003387.1 + 8175 0.7 0.144204
Target:  5'- aGCCCUUGaagucuuucgagcCCUGCGGCGCcgggcGGCCCGGc- -3'
miRNA:   3'- -CGGGGGU-------------GGACGCCGCG-----UCGGGCUcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.