Results 1 - 20 of 82 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12988 | 5' | -64.9 | NC_003387.1 | + | 46883 | 1.04 | 0.000291 |
Target: 5'- cGCCCCCACCUGCGGCGCAGCCCGGGu -3' miRNA: 3'- -CGGGGGUGGACGCCGCGUCGGGCUCc -5' |
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12988 | 5' | -64.9 | NC_003387.1 | + | 43949 | 0.69 | 0.177545 |
Target: 5'- cGCCCgCCGCCgcaCGGCGaaGGCCCGcauGGc -3' miRNA: 3'- -CGGG-GGUGGac-GCCGCg-UCGGGCu--CC- -5' |
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12988 | 5' | -64.9 | NC_003387.1 | + | 45722 | 0.69 | 0.182107 |
Target: 5'- aGCUgCUGCgcgacauuCUGCGGCGCcugcacaaguGGUCCGAGGg -3' miRNA: 3'- -CGGgGGUG--------GACGCCGCG----------UCGGGCUCC- -5' |
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12988 | 5' | -64.9 | NC_003387.1 | + | 48073 | 0.66 | 0.283316 |
Target: 5'- cGCCCCgaagCGCCUcgacggGUGGCGCugccgcugcGCCCGcGGu -3' miRNA: 3'- -CGGGG----GUGGA------CGCCGCGu--------CGGGCuCC- -5' |
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12988 | 5' | -64.9 | NC_003387.1 | + | 48303 | 0.72 | 0.102486 |
Target: 5'- cGCCgCCCGCCUcgacgaaaucgagGCGGCGCgcgAGCgCGAGu -3' miRNA: 3'- -CGG-GGGUGGA-------------CGCCGCG---UCGgGCUCc -5' |
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12988 | 5' | -64.9 | NC_003387.1 | + | 8082 | 0.72 | 0.102759 |
Target: 5'- aCCCgCUGCCgGuCGGCGCcaacccGCCCGAGGg -3' miRNA: 3'- cGGG-GGUGGaC-GCCGCGu-----CGGGCUCC- -5' |
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12988 | 5' | -64.9 | NC_003387.1 | + | 8263 | 0.71 | 0.11424 |
Target: 5'- gGCCaaCCACCgcaaGGUGCAcacGCCCGAGGg -3' miRNA: 3'- -CGGg-GGUGGacg-CCGCGU---CGGGCUCC- -5' |
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12988 | 5' | -64.9 | NC_003387.1 | + | 3530 | 0.71 | 0.120421 |
Target: 5'- uGCCCCCGCCgccgccccagGCGGCuGCucaGGCgcucaaCGAGGg -3' miRNA: 3'- -CGGGGGUGGa---------CGCCG-CG---UCGg-----GCUCC- -5' |
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12988 | 5' | -64.9 | NC_003387.1 | + | 21459 | 0.7 | 0.140874 |
Target: 5'- -aCCCgGCCccGCuGGCGCAGCCCGcgccGGu -3' miRNA: 3'- cgGGGgUGGa-CG-CCGCGUCGGGCu---CC- -5' |
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12988 | 5' | -64.9 | NC_003387.1 | + | 3903 | 0.69 | 0.177545 |
Target: 5'- uGCCCgacccugaCCGCCUG-GGUGCuaacGCCCGGuGGg -3' miRNA: 3'- -CGGG--------GGUGGACgCCGCGu---CGGGCU-CC- -5' |
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12988 | 5' | -64.9 | NC_003387.1 | + | 24641 | 0.69 | 0.160299 |
Target: 5'- cGCaCCUCGcCCUGCuGCGCgaggucgccAGCgCCGAGGg -3' miRNA: 3'- -CG-GGGGU-GGACGcCGCG---------UCG-GGCUCC- -5' |
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12988 | 5' | -64.9 | NC_003387.1 | + | 31115 | 0.7 | 0.137257 |
Target: 5'- aCCCCCgagcGCCagGUgGGCGCcGCCCGAGa -3' miRNA: 3'- cGGGGG----UGGa-CG-CCGCGuCGGGCUCc -5' |
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12988 | 5' | -64.9 | NC_003387.1 | + | 48198 | 0.78 | 0.036643 |
Target: 5'- uGCCCgCACCgGCGGCgGCGGC-CGAGGu -3' miRNA: 3'- -CGGGgGUGGaCGCCG-CGUCGgGCUCC- -5' |
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12988 | 5' | -64.9 | NC_003387.1 | + | 44761 | 0.69 | 0.164464 |
Target: 5'- cGCCgCCCGCC-GUGaaGCGGCCCGAc- -3' miRNA: 3'- -CGG-GGGUGGaCGCcgCGUCGGGCUcc -5' |
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12988 | 5' | -64.9 | NC_003387.1 | + | 13127 | 0.74 | 0.06687 |
Target: 5'- aGCa--CACC-GCGGCGCAGCuuGAGGa -3' miRNA: 3'- -CGgggGUGGaCGCCGCGUCGggCUCC- -5' |
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12988 | 5' | -64.9 | NC_003387.1 | + | 6122 | 0.71 | 0.126912 |
Target: 5'- aCCaCgCACCUGcCGGUGCuggcgacccuGCCCGAGGc -3' miRNA: 3'- cGG-GgGUGGAC-GCCGCGu---------CGGGCUCC- -5' |
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12988 | 5' | -64.9 | NC_003387.1 | + | 34202 | 0.69 | 0.173085 |
Target: 5'- cGCCUgcgugCCACC-GCGGCG--GCCCGAGa -3' miRNA: 3'- -CGGG-----GGUGGaCGCCGCguCGGGCUCc -5' |
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12988 | 5' | -64.9 | NC_003387.1 | + | 34505 | 0.69 | 0.177997 |
Target: 5'- cGCCCgCCGC-UGCGGCGCcgcgauccucgggcuGCCCGucGa -3' miRNA: 3'- -CGGG-GGUGgACGCCGCGu--------------CGGGCucC- -5' |
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12988 | 5' | -64.9 | NC_003387.1 | + | 21691 | 0.73 | 0.078637 |
Target: 5'- cGCCCUgGCCgccucgGCGaGCGCGGCCCGc-- -3' miRNA: 3'- -CGGGGgUGGa-----CGC-CGCGUCGGGCucc -5' |
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12988 | 5' | -64.9 | NC_003387.1 | + | 28910 | 0.72 | 0.105523 |
Target: 5'- cGCCCUCACguauCUGCuGCGCGGCggCGAGGu -3' miRNA: 3'- -CGGGGGUG----GACGcCGCGUCGg-GCUCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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