miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12988 5' -64.9 NC_003387.1 + 638 0.66 0.257515
Target:  5'- cGUCgCCGCC-GCGGCaGCGacGCCCGAu- -3'
miRNA:   3'- -CGGgGGUGGaCGCCG-CGU--CGGGCUcc -5'
12988 5' -64.9 NC_003387.1 + 982 0.67 0.222457
Target:  5'- uGCCgCCGCCga-GGCGCcGaCCGGGGu -3'
miRNA:   3'- -CGGgGGUGGacgCCGCGuCgGGCUCC- -5'
12988 5' -64.9 NC_003387.1 + 1762 0.68 0.186773
Target:  5'- -gCCCgGCg-GCGGCGCuggcGCCCGAGc -3'
miRNA:   3'- cgGGGgUGgaCGCCGCGu---CGGGCUCc -5'
12988 5' -64.9 NC_003387.1 + 3530 0.71 0.120421
Target:  5'- uGCCCCCGCCgccgccccagGCGGCuGCucaGGCgcucaaCGAGGg -3'
miRNA:   3'- -CGGGGGUGGa---------CGCCG-CG---UCGg-----GCUCC- -5'
12988 5' -64.9 NC_003387.1 + 3663 0.66 0.283316
Target:  5'- uGCCCCgGCUgaGCGGCcugaccgAGgCCGAGGg -3'
miRNA:   3'- -CGGGGgUGGa-CGCCGcg-----UCgGGCUCC- -5'
12988 5' -64.9 NC_003387.1 + 3903 0.69 0.177545
Target:  5'- uGCCCgacccugaCCGCCUG-GGUGCuaacGCCCGGuGGg -3'
miRNA:   3'- -CGGG--------GGUGGACgCCGCGu---CGGGCU-CC- -5'
12988 5' -64.9 NC_003387.1 + 4556 0.68 0.2065
Target:  5'- gGCCUgCGCCUGCGcgaccGCGCGGgCCucGGu -3'
miRNA:   3'- -CGGGgGUGGACGC-----CGCGUCgGGcuCC- -5'
12988 5' -64.9 NC_003387.1 + 5338 0.67 0.228004
Target:  5'- uGCCCCgCGCUUGCGGUGuCGGUgUUGAGc -3'
miRNA:   3'- -CGGGG-GUGGACGCCGC-GUCG-GGCUCc -5'
12988 5' -64.9 NC_003387.1 + 6012 0.67 0.222457
Target:  5'- uCgCCCGCCUGCuuGGCGUccAGCggcaCGAGGu -3'
miRNA:   3'- cGgGGGUGGACG--CCGCG--UCGg---GCUCC- -5'
12988 5' -64.9 NC_003387.1 + 6105 0.69 0.160299
Target:  5'- gGCUCgaaCACCUgcgacaugcGCGGCaGCGGCuuGAGGg -3'
miRNA:   3'- -CGGGg--GUGGA---------CGCCG-CGUCGggCUCC- -5'
12988 5' -64.9 NC_003387.1 + 6122 0.71 0.126912
Target:  5'- aCCaCgCACCUGcCGGUGCuggcgacccuGCCCGAGGc -3'
miRNA:   3'- cGG-GgGUGGAC-GCCGCGu---------CGGGCUCC- -5'
12988 5' -64.9 NC_003387.1 + 7263 0.69 0.173085
Target:  5'- cGCUCCUaACCUGgcuccaCGGCGCAgGCCCGGc- -3'
miRNA:   3'- -CGGGGG-UGGAC------GCCGCGU-CGGGCUcc -5'
12988 5' -64.9 NC_003387.1 + 7732 0.67 0.227444
Target:  5'- uGCCUcacagcaCCGCCUcgGCGGCagcggcgaucGCGGCCUGAGc -3'
miRNA:   3'- -CGGG-------GGUGGA--CGCCG----------CGUCGGGCUCc -5'
12988 5' -64.9 NC_003387.1 + 8082 0.72 0.102759
Target:  5'- aCCCgCUGCCgGuCGGCGCcaacccGCCCGAGGg -3'
miRNA:   3'- cGGG-GGUGGaC-GCCGCGu-----CGGGCUCC- -5'
12988 5' -64.9 NC_003387.1 + 8175 0.7 0.144204
Target:  5'- aGCCCUUGaagucuuucgagcCCUGCGGCGCcgggcGGCCCGGc- -3'
miRNA:   3'- -CGGGGGU-------------GGACGCCGCG-----UCGGGCUcc -5'
12988 5' -64.9 NC_003387.1 + 8263 0.71 0.11424
Target:  5'- gGCCaaCCACCgcaaGGUGCAcacGCCCGAGGg -3'
miRNA:   3'- -CGGg-GGUGGacg-CCGCGU---CGGGCUCC- -5'
12988 5' -64.9 NC_003387.1 + 8907 0.67 0.245351
Target:  5'- cGCCCUCGCCgaucGUGCAGCacucgUCGAGGa -3'
miRNA:   3'- -CGGGGGUGGacgcCGCGUCG-----GGCUCC- -5'
12988 5' -64.9 NC_003387.1 + 9600 0.72 0.100063
Target:  5'- cGCCCaCCACC-GCGGCGCcGCgCCGucGc -3'
miRNA:   3'- -CGGG-GGUGGaCGCCGCGuCG-GGCucC- -5'
12988 5' -64.9 NC_003387.1 + 13127 0.74 0.06687
Target:  5'- aGCa--CACC-GCGGCGCAGCuuGAGGa -3'
miRNA:   3'- -CGgggGUGGaCGCCGCGUCGggCUCC- -5'
12988 5' -64.9 NC_003387.1 + 13640 0.69 0.182107
Target:  5'- aCCCggCCACCgucgGCGGCGgcuCGGUcgCCGAGGg -3'
miRNA:   3'- cGGG--GGUGGa---CGCCGC---GUCG--GGCUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.