miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12993 3' -60.2 NC_003387.1 + 52545 0.66 0.423801
Target:  5'- gGCG-GCCGGGCGUcacuuucgugaccgaGCG-CGAgugguagcaaacCGCCCGg -3'
miRNA:   3'- -UGCaCGGUCCGCA---------------CGUaGCU------------GCGGGC- -5'
12993 3' -60.2 NC_003387.1 + 51223 0.7 0.243856
Target:  5'- cACGUcgGCCGcGGCcugGUGCucgacGUCGACGCCCu -3'
miRNA:   3'- -UGCA--CGGU-CCG---CACG-----UAGCUGCGGGc -5'
12993 3' -60.2 NC_003387.1 + 50253 0.66 0.438705
Target:  5'- uACGUcagcGCCGGGCgGUGCAccUCGgccuggcgcGCGUCCa -3'
miRNA:   3'- -UGCA----CGGUCCG-CACGU--AGC---------UGCGGGc -5'
12993 3' -60.2 NC_003387.1 + 50139 0.68 0.350803
Target:  5'- uGCG-GCCAGGCGUcgaccgacGgGUCGGCGUacaCGg -3'
miRNA:   3'- -UGCaCGGUCCGCA--------CgUAGCUGCGg--GC- -5'
12993 3' -60.2 NC_003387.1 + 49397 0.69 0.283014
Target:  5'- aGCGgGCCucGGUGUcacgccacaGCAccUCGGCGCCCGa -3'
miRNA:   3'- -UGCaCGGu-CCGCA---------CGU--AGCUGCGGGC- -5'
12993 3' -60.2 NC_003387.1 + 49236 0.66 0.438705
Target:  5'- gGCG-GCCGaGCGgcUGC-UCGACGCCgGg -3'
miRNA:   3'- -UGCaCGGUcCGC--ACGuAGCUGCGGgC- -5'
12993 3' -60.2 NC_003387.1 + 49176 0.66 0.438705
Target:  5'- gGCGgucGCgCAGGCGgcgGcCGUCGACguugcugaGCCCGc -3'
miRNA:   3'- -UGCa--CG-GUCCGCa--C-GUAGCUG--------CGGGC- -5'
12993 3' -60.2 NC_003387.1 + 48561 1.07 0.000458
Target:  5'- cACGUGCCAGGCGUGCAUCGACGCCCGc -3'
miRNA:   3'- -UGCACGGUCCGCACGUAGCUGCGGGC- -5'
12993 3' -60.2 NC_003387.1 + 47244 0.66 0.438705
Target:  5'- -gGUGCCGGGCGacuUGaa-CGAucUGCCCGa -3'
miRNA:   3'- ugCACGGUCCGC---ACguaGCU--GCGGGC- -5'
12993 3' -60.2 NC_003387.1 + 47031 0.66 0.438705
Target:  5'- gGCGgcccgGCCGGGCaugagGCGU-GGCGCUCGu -3'
miRNA:   3'- -UGCa----CGGUCCGca---CGUAgCUGCGGGC- -5'
12993 3' -60.2 NC_003387.1 + 45932 0.71 0.203978
Target:  5'- cACGUGCCcGaGCGUGUucgcCGACGgCCCGc -3'
miRNA:   3'- -UGCACGGuC-CGCACGua--GCUGC-GGGC- -5'
12993 3' -60.2 NC_003387.1 + 45847 0.68 0.342729
Target:  5'- -gGUGCCAcgacGGCGaccgGCGUCuuguuGGCGCCCu -3'
miRNA:   3'- ugCACGGU----CCGCa---CGUAG-----CUGCGGGc -5'
12993 3' -60.2 NC_003387.1 + 45100 0.71 0.231841
Target:  5'- gGCG-GCCAGGU---CGUCGACGCCgCGg -3'
miRNA:   3'- -UGCaCGGUCCGcacGUAGCUGCGG-GC- -5'
12993 3' -60.2 NC_003387.1 + 44920 0.66 0.457749
Target:  5'- cGCGUcGCCGGGCugggGCGacgaGGCGCUCGc -3'
miRNA:   3'- -UGCA-CGGUCCGca--CGUag--CUGCGGGC- -5'
12993 3' -60.2 NC_003387.1 + 44524 0.66 0.429355
Target:  5'- uCGUGCCGGGCc-GCc-CGGCGCCg- -3'
miRNA:   3'- uGCACGGUCCGcaCGuaGCUGCGGgc -5'
12993 3' -60.2 NC_003387.1 + 43683 0.67 0.411011
Target:  5'- cGCGauCCuGGCGUGgAUCGccgacgGCGCCCGc -3'
miRNA:   3'- -UGCacGGuCCGCACgUAGC------UGCGGGC- -5'
12993 3' -60.2 NC_003387.1 + 41778 0.68 0.326987
Target:  5'- gACGUcaaGCCGGGCGcgUGCcgCGAccuggcgcaCGCCUGg -3'
miRNA:   3'- -UGCA---CGGUCCGC--ACGuaGCU---------GCGGGC- -5'
12993 3' -60.2 NC_003387.1 + 41328 0.79 0.06163
Target:  5'- cAUGUGCCAGGCGUGCGUgaaGCGCCa- -3'
miRNA:   3'- -UGCACGGUCCGCACGUAgc-UGCGGgc -5'
12993 3' -60.2 NC_003387.1 + 41015 0.67 0.375824
Target:  5'- gACG-GCCGGGuCGacUGCGUCGACGgcgacauugacaCCCa -3'
miRNA:   3'- -UGCaCGGUCC-GC--ACGUAGCUGC------------GGGc -5'
12993 3' -60.2 NC_003387.1 + 39706 0.66 0.467435
Target:  5'- gACGUG-CGGGCGcu-GUCGACcuuGCCCGa -3'
miRNA:   3'- -UGCACgGUCCGCacgUAGCUG---CGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.