miRNA display CGI


Results 1 - 20 of 237 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12997 3' -56.2 NC_003387.1 + 18805 0.66 0.700943
Target:  5'- aGCuCGGGguCGguuugcGCGCaGAUCGCCGAcGGg -3'
miRNA:   3'- aUG-GCUCguGC------UGUG-CUAGCGGCU-CC- -5'
12997 3' -56.2 NC_003387.1 + 11846 0.66 0.700943
Target:  5'- gGCCGccUggGACAUGAUCGCggCGGGGg -3'
miRNA:   3'- aUGGCucGugCUGUGCUAGCG--GCUCC- -5'
12997 3' -56.2 NC_003387.1 + 44962 0.66 0.700943
Target:  5'- gGCCGcGGCucaGGcCGCGAUCGCCGcugccgccgAGGc -3'
miRNA:   3'- aUGGC-UCGug-CU-GUGCUAGCGGC---------UCC- -5'
12997 3' -56.2 NC_003387.1 + 40527 0.66 0.700943
Target:  5'- cACCGAGCAgCGAC-Cug-C-CCGAGGg -3'
miRNA:   3'- aUGGCUCGU-GCUGuGcuaGcGGCUCC- -5'
12997 3' -56.2 NC_003387.1 + 24648 0.66 0.700943
Target:  5'- cGCCcugcuGCGCGAgGuCGccagCGCCGAGGg -3'
miRNA:   3'- aUGGcu---CGUGCUgU-GCua--GCGGCUCC- -5'
12997 3' -56.2 NC_003387.1 + 34241 0.66 0.700943
Target:  5'- gGCCcucgGGGCGCucGACcgGCuGAUCGCCGAGu -3'
miRNA:   3'- aUGG----CUCGUG--CUG--UG-CUAGCGGCUCc -5'
12997 3' -56.2 NC_003387.1 + 5927 0.66 0.700943
Target:  5'- cGCCGGGgGCuGACAacaGGUuucCGCgCGAGGa -3'
miRNA:   3'- aUGGCUCgUG-CUGUg--CUA---GCG-GCUCC- -5'
12997 3' -56.2 NC_003387.1 + 47039 0.66 0.700943
Target:  5'- gGCCGGGCAUGAgGCGuggCGCucguuuuacccCGAGcGg -3'
miRNA:   3'- aUGGCUCGUGCUgUGCua-GCG-----------GCUC-C- -5'
12997 3' -56.2 NC_003387.1 + 5426 0.66 0.700943
Target:  5'- cGCCGAGgAcaacuCGAC-CGAgggCGCCGAcGGc -3'
miRNA:   3'- aUGGCUCgU-----GCUGuGCUa--GCGGCU-CC- -5'
12997 3' -56.2 NC_003387.1 + 26712 0.66 0.700943
Target:  5'- cGCCGucguGCGCGGCGCGAgcuggaUCGCgaccccggCGAGcGg -3'
miRNA:   3'- aUGGCu---CGUGCUGUGCU------AGCG--------GCUC-C- -5'
12997 3' -56.2 NC_003387.1 + 3748 0.66 0.700943
Target:  5'- gGCCGcauGCccGCGuGCACGAUCGCCa--- -3'
miRNA:   3'- aUGGCu--CG--UGC-UGUGCUAGCGGcucc -5'
12997 3' -56.2 NC_003387.1 + 8454 0.66 0.700943
Target:  5'- aGCCaccGCGCGGCGCGGUguuUGCUGcAGGc -3'
miRNA:   3'- aUGGcu-CGUGCUGUGCUA---GCGGC-UCC- -5'
12997 3' -56.2 NC_003387.1 + 23956 0.66 0.700943
Target:  5'- aUGCUGcAGCACGuGCGCag-CGCCGGGcGg -3'
miRNA:   3'- -AUGGC-UCGUGC-UGUGcuaGCGGCUC-C- -5'
12997 3' -56.2 NC_003387.1 + 31160 0.66 0.699875
Target:  5'- cGCCuGGGCcacggucugcacgACGACGCGGgcgUCGCCGGu- -3'
miRNA:   3'- aUGG-CUCG-------------UGCUGUGCU---AGCGGCUcc -5'
12997 3' -56.2 NC_003387.1 + 48726 0.66 0.697737
Target:  5'- cACCGuGCgccGCGACgaguccaugaccgcGCgGGUCGCCGAGc -3'
miRNA:   3'- aUGGCuCG---UGCUG--------------UG-CUAGCGGCUCc -5'
12997 3' -56.2 NC_003387.1 + 52378 0.66 0.694526
Target:  5'- gAUCGAccGCGCGcACGCGGaucuuggcgugcgugUCGCCGGGc -3'
miRNA:   3'- aUGGCU--CGUGC-UGUGCU---------------AGCGGCUCc -5'
12997 3' -56.2 NC_003387.1 + 9784 0.66 0.690236
Target:  5'- uUGgCGAGCGCGAcCAUG-UUGUCGAGc -3'
miRNA:   3'- -AUgGCUCGUGCU-GUGCuAGCGGCUCc -5'
12997 3' -56.2 NC_003387.1 + 45414 0.66 0.690236
Target:  5'- aGCCGAcagGUACGGCcccgGCGAguuacCGCCGGGc -3'
miRNA:   3'- aUGGCU---CGUGCUG----UGCUa----GCGGCUCc -5'
12997 3' -56.2 NC_003387.1 + 19045 0.66 0.690236
Target:  5'- cGCCGAGU-CGAgGuCGAccaUCGCCGccAGGg -3'
miRNA:   3'- aUGGCUCGuGCUgU-GCU---AGCGGC--UCC- -5'
12997 3' -56.2 NC_003387.1 + 35203 0.66 0.690236
Target:  5'- gGCCGAGCcgcuGCG-CAUGcUgGCCGAGc -3'
miRNA:   3'- aUGGCUCG----UGCuGUGCuAgCGGCUCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.