miRNA display CGI


Results 1 - 20 of 237 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12997 3' -56.2 NC_003387.1 + 52577 0.69 0.50779
Target:  5'- gGCCcAGCucgGCGGCGCgGAUCG-CGAGGg -3'
miRNA:   3'- aUGGcUCG---UGCUGUG-CUAGCgGCUCC- -5'
12997 3' -56.2 NC_003387.1 + 52378 0.66 0.694526
Target:  5'- gAUCGAccGCGCGcACGCGGaucuuggcgugcgugUCGCCGGGc -3'
miRNA:   3'- aUGGCU--CGUGC-UGUGCU---------------AGCGGCUCc -5'
12997 3' -56.2 NC_003387.1 + 51821 0.7 0.457414
Target:  5'- aUGCacAGCGCGaACACGAgcgCGCCGAGc -3'
miRNA:   3'- -AUGgcUCGUGC-UGUGCUa--GCGGCUCc -5'
12997 3' -56.2 NC_003387.1 + 51783 0.69 0.494452
Target:  5'- gACUGguGGCugGGCGuCGAUCGCCccgagugggacugaGAGGa -3'
miRNA:   3'- aUGGC--UCGugCUGU-GCUAGCGG--------------CUCC- -5'
12997 3' -56.2 NC_003387.1 + 51577 0.68 0.57108
Target:  5'- cACCGcGCAUG-CACGcaggCGCCGAGc -3'
miRNA:   3'- aUGGCuCGUGCuGUGCua--GCGGCUCc -5'
12997 3' -56.2 NC_003387.1 + 51433 0.66 0.676236
Target:  5'- cGCCaGGGCGuCGAgGCGcAucaccgugaacaccUCGCCGGGGu -3'
miRNA:   3'- aUGG-CUCGU-GCUgUGC-U--------------AGCGGCUCC- -5'
12997 3' -56.2 NC_003387.1 + 51353 0.72 0.348675
Target:  5'- cGCUGAGCGcCGACgGCGAggUGCCGuGGa -3'
miRNA:   3'- aUGGCUCGU-GCUG-UGCUa-GCGGCuCC- -5'
12997 3' -56.2 NC_003387.1 + 50519 0.7 0.416316
Target:  5'- cGgCGAGCACGAggcaccccugagccCGCGGUgGCuCGGGGg -3'
miRNA:   3'- aUgGCUCGUGCU--------------GUGCUAgCG-GCUCC- -5'
12997 3' -56.2 NC_003387.1 + 50403 0.66 0.690236
Target:  5'- cGCCGAGCuguacgucggGCGGCA-GAUCGUCGccucGGc -3'
miRNA:   3'- aUGGCUCG----------UGCUGUgCUAGCGGCu---CC- -5'
12997 3' -56.2 NC_003387.1 + 50361 0.67 0.614336
Target:  5'- gACCGcGUACGugGCGcucgaCGCCGAcGGc -3'
miRNA:   3'- aUGGCuCGUGCugUGCua---GCGGCU-CC- -5'
12997 3' -56.2 NC_003387.1 + 50117 0.67 0.592643
Target:  5'- --gCGAGCGCcugguCACGAUCGCCGu-- -3'
miRNA:   3'- augGCUCGUGcu---GUGCUAGCGGCucc -5'
12997 3' -56.2 NC_003387.1 + 50087 1.08 0.001058
Target:  5'- uUACCGAGCACGACACGAUCGCCGAGGc -3'
miRNA:   3'- -AUGGCUCGUGCUGUGCUAGCGGCUCC- -5'
12997 3' -56.2 NC_003387.1 + 50026 0.73 0.280033
Target:  5'- cGCCGAGCACaAC-C--UCGCCGAGGu -3'
miRNA:   3'- aUGGCUCGUGcUGuGcuAGCGGCUCC- -5'
12997 3' -56.2 NC_003387.1 + 49799 0.74 0.246772
Target:  5'- cGCCGAacCGCGACACGAUCaGCCGGu- -3'
miRNA:   3'- aUGGCUc-GUGCUGUGCUAG-CGGCUcc -5'
12997 3' -56.2 NC_003387.1 + 49542 0.72 0.332437
Target:  5'- -cCCGAGCAggcucacccCGAuUACGGccUCGCCGAGGu -3'
miRNA:   3'- auGGCUCGU---------GCU-GUGCU--AGCGGCUCC- -5'
12997 3' -56.2 NC_003387.1 + 49421 0.67 0.592643
Target:  5'- aGgUGGGCGCGugAacGUCGCCGAGc -3'
miRNA:   3'- aUgGCUCGUGCugUgcUAGCGGCUCc -5'
12997 3' -56.2 NC_003387.1 + 49312 0.71 0.391693
Target:  5'- aUGCCGGGCAccauCGACAgcaggugcuCGAUCgggaugcccGCCGAGGc -3'
miRNA:   3'- -AUGGCUCGU----GCUGU---------GCUAG---------CGGCUCC- -5'
12997 3' -56.2 NC_003387.1 + 49302 0.7 0.457414
Target:  5'- cGCCGAGCACGccgaggGCACGGcC-CCGAGc -3'
miRNA:   3'- aUGGCUCGUGC------UGUGCUaGcGGCUCc -5'
12997 3' -56.2 NC_003387.1 + 49239 0.72 0.357003
Target:  5'- gGCCGAGCgGCuGCuCGA-CGCCGGGGu -3'
miRNA:   3'- aUGGCUCG-UGcUGuGCUaGCGGCUCC- -5'
12997 3' -56.2 NC_003387.1 + 48726 0.66 0.697737
Target:  5'- cACCGuGCgccGCGACgaguccaugaccgcGCgGGUCGCCGAGc -3'
miRNA:   3'- aUGGCuCG---UGCUG--------------UG-CUAGCGGCUCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.