miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12999 5' -60.2 NC_003387.1 + 39524 0.66 0.429202
Target:  5'- cGUUGACCUUGCCGCGcuucucgaucgcGUCGGCCa--- -3'
miRNA:   3'- -UAGCUGGAGUGGCGC------------CGGCUGGacau -5'
12999 5' -60.2 NC_003387.1 + 733 0.66 0.429202
Target:  5'- -aCGGCCUgGCCGuCGGUgcgcgCGACgUGUGg -3'
miRNA:   3'- uaGCUGGAgUGGC-GCCG-----GCUGgACAU- -5'
12999 5' -60.2 NC_003387.1 + 35660 0.66 0.429202
Target:  5'- -cCGACCUCgACCGCGGgCGGuggCUGa- -3'
miRNA:   3'- uaGCUGGAG-UGGCGCCgGCUg--GACau -5'
12999 5' -60.2 NC_003387.1 + 2562 0.66 0.41987
Target:  5'- --aGAuCCUCGCCGUGuacGCCGACCcGUc -3'
miRNA:   3'- uagCU-GGAGUGGCGC---CGGCUGGaCAu -5'
12999 5' -60.2 NC_003387.1 + 46302 0.66 0.41987
Target:  5'- -aCGGCCuggcccgcagUCACCGCGGCCGgaaucagcGCCgGg- -3'
miRNA:   3'- uaGCUGG----------AGUGGCGCCGGC--------UGGaCau -5'
12999 5' -60.2 NC_003387.1 + 7767 0.66 0.410662
Target:  5'- -gCGGCCUgaGCCGCGGCCugaGCCUu-- -3'
miRNA:   3'- uaGCUGGAg-UGGCGCCGGc--UGGAcau -5'
12999 5' -60.2 NC_003387.1 + 48098 0.66 0.410662
Target:  5'- uAUCGGCCUUgGCCGCcuuGGCCGcCUUGg- -3'
miRNA:   3'- -UAGCUGGAG-UGGCG---CCGGCuGGACau -5'
12999 5' -60.2 NC_003387.1 + 27359 0.66 0.40158
Target:  5'- cUCGACCUCGCCGCucUUGGCgCUGg- -3'
miRNA:   3'- uAGCUGGAGUGGCGccGGCUG-GACau -5'
12999 5' -60.2 NC_003387.1 + 30554 0.66 0.40158
Target:  5'- cAUgGACCgcCGCCGCGGCCGguacgcGCC-GUGc -3'
miRNA:   3'- -UAgCUGGa-GUGGCGCCGGC------UGGaCAU- -5'
12999 5' -60.2 NC_003387.1 + 7859 0.66 0.392627
Target:  5'- cUCGGCCagCACCuuGCGGCagugcaaaucgaCGACCUGg- -3'
miRNA:   3'- uAGCUGGa-GUGG--CGCCG------------GCUGGACau -5'
12999 5' -60.2 NC_003387.1 + 47019 0.67 0.383804
Target:  5'- cUCGACUUCAUUgGCGGCCcGGCCgGg- -3'
miRNA:   3'- uAGCUGGAGUGG-CGCCGG-CUGGaCau -5'
12999 5' -60.2 NC_003387.1 + 21654 0.67 0.383804
Target:  5'- cGUCGACCgcgGCgGCGGCCGAgCa--- -3'
miRNA:   3'- -UAGCUGGag-UGgCGCCGGCUgGacau -5'
12999 5' -60.2 NC_003387.1 + 51964 0.67 0.383804
Target:  5'- -cCGACgUCGCUGCcgcgguGGCCGACCg--- -3'
miRNA:   3'- uaGCUGgAGUGGCG------CCGGCUGGacau -5'
12999 5' -60.2 NC_003387.1 + 41629 0.67 0.383804
Target:  5'- -aCGACCgcgcccaagcuaaggCGCUGCGGUacgucgacgacugCGACCUGUGg -3'
miRNA:   3'- uaGCUGGa--------------GUGGCGCCG-------------GCUGGACAU- -5'
12999 5' -60.2 NC_003387.1 + 41741 0.67 0.383804
Target:  5'- --gGACgUCACC-CGGCUGGCCgcgGUGu -3'
miRNA:   3'- uagCUGgAGUGGcGCCGGCUGGa--CAU- -5'
12999 5' -60.2 NC_003387.1 + 833 0.67 0.375115
Target:  5'- -aCGGCCUguaCGCGGCCGACaUGUu -3'
miRNA:   3'- uaGCUGGAgugGCGCCGGCUGgACAu -5'
12999 5' -60.2 NC_003387.1 + 6370 0.67 0.375115
Target:  5'- cUUGGCCUCgGCCGCGGgCGACg---- -3'
miRNA:   3'- uAGCUGGAG-UGGCGCCgGCUGgacau -5'
12999 5' -60.2 NC_003387.1 + 34700 0.67 0.375115
Target:  5'- cGUgGGCCUggUACaUGCGGCgCGACCUGg- -3'
miRNA:   3'- -UAgCUGGA--GUG-GCGCCG-GCUGGACau -5'
12999 5' -60.2 NC_003387.1 + 10972 0.67 0.375115
Target:  5'- gGUCGcACa-CACCGCGGCCaGCCggGUGa -3'
miRNA:   3'- -UAGC-UGgaGUGGCGCCGGcUGGa-CAU- -5'
12999 5' -60.2 NC_003387.1 + 17140 0.67 0.375115
Target:  5'- cUCGACCggcugUCACCgGCGGCCcGCgCUGa- -3'
miRNA:   3'- uAGCUGG-----AGUGG-CGCCGGcUG-GACau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.