miRNA display CGI


Results 1 - 20 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13000 5' -63.2 NC_003387.1 + 3555 0.66 0.340118
Target:  5'- cGCCuGCGCGAc-CGCCUgCGcGCUGGu -3'
miRNA:   3'- -CGGuCGCGCUucGCGGGgGCuCGGCU- -5'
13000 5' -63.2 NC_003387.1 + 34980 0.66 0.302716
Target:  5'- -gCGGUGUGGccccuGGCgGCCCggCCGGGCCGGg -3'
miRNA:   3'- cgGUCGCGCU-----UCG-CGGG--GGCUCGGCU- -5'
13000 5' -63.2 NC_003387.1 + 18693 0.66 0.302716
Target:  5'- aCCGGgGUGggGCGCCgugCCGAGgCa- -3'
miRNA:   3'- cGGUCgCGCuuCGCGGg--GGCUCgGcu -5'
13000 5' -63.2 NC_003387.1 + 50709 0.66 0.340118
Target:  5'- cGCCugGGCGCGcacaaggucGAGCGUuaCCUCGAcGCCGu -3'
miRNA:   3'- -CGG--UCGCGC---------UUCGCG--GGGGCU-CGGCu -5'
13000 5' -63.2 NC_003387.1 + 21468 0.66 0.302716
Target:  5'- cGCUGGCGCagcccGCGCCggUCGGGCCGGg -3'
miRNA:   3'- -CGGUCGCGcuu--CGCGGg-GGCUCGGCU- -5'
13000 5' -63.2 NC_003387.1 + 41376 0.66 0.302716
Target:  5'- cGCCgAGCGUGAggccgAGCGCCgggcgaCCGAGgCGc -3'
miRNA:   3'- -CGG-UCGCGCU-----UCGCGGg-----GGCUCgGCu -5'
13000 5' -63.2 NC_003387.1 + 16985 0.66 0.309935
Target:  5'- cGCgGGCGgGcuGCGUcaucgaCCCCGAGCgGGc -3'
miRNA:   3'- -CGgUCGCgCuuCGCG------GGGGCUCGgCU- -5'
13000 5' -63.2 NC_003387.1 + 44620 0.66 0.309935
Target:  5'- gGCCguGGCGCG-AGCGUguggCCCUG-GCCGc -3'
miRNA:   3'- -CGG--UCGCGCuUCGCG----GGGGCuCGGCu -5'
13000 5' -63.2 NC_003387.1 + 2459 0.66 0.317286
Target:  5'- cGCCAgGC-CGAGGUGCaccgCCCGGcGCUGAc -3'
miRNA:   3'- -CGGU-CGcGCUUCGCGg---GGGCU-CGGCU- -5'
13000 5' -63.2 NC_003387.1 + 44895 0.66 0.302716
Target:  5'- cGCCuGCGCGccGgGCaCCUCG-GCCGc -3'
miRNA:   3'- -CGGuCGCGCuuCgCG-GGGGCuCGGCu -5'
13000 5' -63.2 NC_003387.1 + 44182 0.66 0.309935
Target:  5'- uGCCcGCGCG-GGCaacuaacuaCCCgCGAGCCGGu -3'
miRNA:   3'- -CGGuCGCGCuUCGc--------GGGgGCUCGGCU- -5'
13000 5' -63.2 NC_003387.1 + 33546 0.66 0.317286
Target:  5'- uGCCGuuagcgaccGUGCGGGccGCGCCCUCGAcagcGUCGAc -3'
miRNA:   3'- -CGGU---------CGCGCUU--CGCGGGGGCU----CGGCU- -5'
13000 5' -63.2 NC_003387.1 + 4641 0.66 0.340118
Target:  5'- cGgCAGCGCcacccgucGAGGCGCUUCgGGGCgCGGu -3'
miRNA:   3'- -CgGUCGCG--------CUUCGCGGGGgCUCG-GCU- -5'
13000 5' -63.2 NC_003387.1 + 3237 0.66 0.332377
Target:  5'- cGCCGG-GCG-GGCGCa-CCG-GCCGAa -3'
miRNA:   3'- -CGGUCgCGCuUCGCGggGGCuCGGCU- -5'
13000 5' -63.2 NC_003387.1 + 30783 0.66 0.332377
Target:  5'- cGCCuGCcCGc--CGCCCCCGccGCCGAg -3'
miRNA:   3'- -CGGuCGcGCuucGCGGGGGCu-CGGCU- -5'
13000 5' -63.2 NC_003387.1 + 38567 0.66 0.332377
Target:  5'- cCCGGCccgGCGAGGUGCCacaCCuuGCCGu -3'
miRNA:   3'- cGGUCG---CGCUUCGCGGg--GGcuCGGCu -5'
13000 5' -63.2 NC_003387.1 + 26823 0.66 0.332377
Target:  5'- gGUgAGCGCGc--CGCCCUgGAcGCCGGg -3'
miRNA:   3'- -CGgUCGCGCuucGCGGGGgCU-CGGCU- -5'
13000 5' -63.2 NC_003387.1 + 35707 0.66 0.324012
Target:  5'- aGCCGcCGCGGuuugauuAGCGCCCgCUcgGGGUCGAu -3'
miRNA:   3'- -CGGUcGCGCU-------UCGCGGG-GG--CUCGGCU- -5'
13000 5' -63.2 NC_003387.1 + 32230 0.66 0.324012
Target:  5'- uGCCGGUGuCGGAGCGgaaaCCCCacccgcggaacgcCGcGCCGAu -3'
miRNA:   3'- -CGGUCGC-GCUUCGC----GGGG-------------GCuCGGCU- -5'
13000 5' -63.2 NC_003387.1 + 12706 0.66 0.317286
Target:  5'- uCCcGCGCG-AGCGCCCgCgGGGCUc- -3'
miRNA:   3'- cGGuCGCGCuUCGCGGG-GgCUCGGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.