miRNA display CGI


Results 1 - 20 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13000 5' -63.2 NC_003387.1 + 50958 1.1 0.000152
Target:  5'- cGCCAGCGCGAAGCGCCCCCGAGCCGAu -3'
miRNA:   3'- -CGGUCGCGCUUCGCGGGGGCUCGGCU- -5'
13000 5' -63.2 NC_003387.1 + 6132 0.7 0.162232
Target:  5'- uGCCGGUGCu-GGCGaCCcugCCCGAGgCCGAu -3'
miRNA:   3'- -CGGUCGCGcuUCGC-GG---GGGCUC-GGCU- -5'
13000 5' -63.2 NC_003387.1 + 8506 0.7 0.170872
Target:  5'- aCCAG-GC-AAGUGUCCCuCGGGCCGAc -3'
miRNA:   3'- cGGUCgCGcUUCGCGGGG-GCUCGGCU- -5'
13000 5' -63.2 NC_003387.1 + 50709 0.66 0.340118
Target:  5'- cGCCugGGCGCGcacaaggucGAGCGUuaCCUCGAcGCCGu -3'
miRNA:   3'- -CGG--UCGCGC---------UUCGCG--GGGGCU-CGGCu -5'
13000 5' -63.2 NC_003387.1 + 45379 0.75 0.072606
Target:  5'- uGCCGGCGguuaGcuGCGCCCggccgcCCGAGCCGAu -3'
miRNA:   3'- -CGGUCGCg---CuuCGCGGG------GGCUCGGCU- -5'
13000 5' -63.2 NC_003387.1 + 41337 0.75 0.074622
Target:  5'- gGCguGCGUGAAGCGCCaCCGcgcgaaaugcaaGGCCGAc -3'
miRNA:   3'- -CGguCGCGCUUCGCGGgGGC------------UCGGCU- -5'
13000 5' -63.2 NC_003387.1 + 30637 0.73 0.106197
Target:  5'- aGCacaAGCGCGAgAGCGCCUgaGAGCCa- -3'
miRNA:   3'- -CGg--UCGCGCU-UCGCGGGggCUCGGcu -5'
13000 5' -63.2 NC_003387.1 + 3519 0.73 0.109089
Target:  5'- aCCGGCGCc-AGUGCCCCCGccGCCGc -3'
miRNA:   3'- cGGUCGCGcuUCGCGGGGGCu-CGGCu -5'
13000 5' -63.2 NC_003387.1 + 30170 0.72 0.12602
Target:  5'- gGCCcGCGCGAucgccucgggcaaggAGCaGUCgCCGAGCCGGu -3'
miRNA:   3'- -CGGuCGCGCU---------------UCG-CGGgGGCUCGGCU- -5'
13000 5' -63.2 NC_003387.1 + 41915 0.71 0.158061
Target:  5'- cGCCAGCuCGugccguGUGCCgCCGAcGCCGAc -3'
miRNA:   3'- -CGGUCGcGCuu----CGCGGgGGCU-CGGCU- -5'
13000 5' -63.2 NC_003387.1 + 47394 0.71 0.142331
Target:  5'- cGCaAGCGCGggGCaaccgGCCCCgcccCGAGcCCGAg -3'
miRNA:   3'- -CGgUCGCGCuuCG-----CGGGG----GCUC-GGCU- -5'
13000 5' -63.2 NC_003387.1 + 1763 0.72 0.124687
Target:  5'- cCCGGCgGCGgcGCugGCgCCCGAGCUGAa -3'
miRNA:   3'- cGGUCG-CGCuuCG--CGgGGGCUCGGCU- -5'
13000 5' -63.2 NC_003387.1 + 9369 0.78 0.042946
Target:  5'- aGCCGGUGgcggcCGAGGCGaCCCCCGAGgCGGg -3'
miRNA:   3'- -CGGUCGC-----GCUUCGC-GGGGGCUCgGCU- -5'
13000 5' -63.2 NC_003387.1 + 51101 0.71 0.146124
Target:  5'- aCCcGCGCGAGGCuGCCcacacgcgCCCG-GCCGAa -3'
miRNA:   3'- cGGuCGCGCUUCG-CGG--------GGGCuCGGCU- -5'
13000 5' -63.2 NC_003387.1 + 36630 0.76 0.063288
Target:  5'- gGCCGcCGCGAugcccgacGGCGCCCCCGAGUgGc -3'
miRNA:   3'- -CGGUcGCGCU--------UCGCGGGGGCUCGgCu -5'
13000 5' -63.2 NC_003387.1 + 50517 0.72 0.115096
Target:  5'- aCCGGCGagcaCGAGGCaCCCCUGAGCCc- -3'
miRNA:   3'- cGGUCGC----GCUUCGcGGGGGCUCGGcu -5'
13000 5' -63.2 NC_003387.1 + 22959 0.71 0.155605
Target:  5'- aCC-GCGUGggGCGCCCCggucaucgugucgggCGGcGCCGAc -3'
miRNA:   3'- cGGuCGCGCuuCGCGGGG---------------GCU-CGGCU- -5'
13000 5' -63.2 NC_003387.1 + 24465 0.7 0.163928
Target:  5'- -gCAGCGCGAGGUGCUgaaccugcugcgcguCCUG-GCCGAc -3'
miRNA:   3'- cgGUCGCGCUUCGCGG---------------GGGCuCGGCU- -5'
13000 5' -63.2 NC_003387.1 + 138 0.75 0.068731
Target:  5'- cGCCcuCGCGAuccGCGCCgCCGAGCUGGg -3'
miRNA:   3'- -CGGucGCGCUu--CGCGGgGGCUCGGCU- -5'
13000 5' -63.2 NC_003387.1 + 45063 0.74 0.085531
Target:  5'- cGCCgAGCGCGucGAGgGCCguCCUGGGCCGGu -3'
miRNA:   3'- -CGG-UCGCGC--UUCgCGG--GGGCUCGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.