Results 1 - 20 of 117 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13000 | 5' | -63.2 | NC_003387.1 | + | 50958 | 1.1 | 0.000152 |
Target: 5'- cGCCAGCGCGAAGCGCCCCCGAGCCGAu -3' miRNA: 3'- -CGGUCGCGCUUCGCGGGGGCUCGGCU- -5' |
|||||||
13000 | 5' | -63.2 | NC_003387.1 | + | 9369 | 0.78 | 0.042946 |
Target: 5'- aGCCGGUGgcggcCGAGGCGaCCCCCGAGgCGGg -3' miRNA: 3'- -CGGUCGC-----GCUUCGC-GGGGGCUCgGCU- -5' |
|||||||
13000 | 5' | -63.2 | NC_003387.1 | + | 39120 | 0.76 | 0.059894 |
Target: 5'- uGCCAGCGCGggGCuGCCagaCUGcggcgaccAGCCGAc -3' miRNA: 3'- -CGGUCGCGCuuCG-CGGg--GGC--------UCGGCU- -5' |
|||||||
13000 | 5' | -63.2 | NC_003387.1 | + | 36630 | 0.76 | 0.063288 |
Target: 5'- gGCCGcCGCGAugcccgacGGCGCCCCCGAGUgGc -3' miRNA: 3'- -CGGUcGCGCU--------UCGCGGGGGCUCGgCu -5' |
|||||||
13000 | 5' | -63.2 | NC_003387.1 | + | 138 | 0.75 | 0.068731 |
Target: 5'- cGCCcuCGCGAuccGCGCCgCCGAGCUGGg -3' miRNA: 3'- -CGGucGCGCUu--CGCGGgGGCUCGGCU- -5' |
|||||||
13000 | 5' | -63.2 | NC_003387.1 | + | 45379 | 0.75 | 0.072606 |
Target: 5'- uGCCGGCGguuaGcuGCGCCCggccgcCCGAGCCGAu -3' miRNA: 3'- -CGGUCGCg---CuuCGCGGG------GGCUCGGCU- -5' |
|||||||
13000 | 5' | -63.2 | NC_003387.1 | + | 41337 | 0.75 | 0.074622 |
Target: 5'- gGCguGCGUGAAGCGCCaCCGcgcgaaaugcaaGGCCGAc -3' miRNA: 3'- -CGguCGCGCUUCGCGGgGGC------------UCGGCU- -5' |
|||||||
13000 | 5' | -63.2 | NC_003387.1 | + | 14099 | 0.74 | 0.083234 |
Target: 5'- cGCCAGCGCG----GCCUgCGGGCCGAa -3' miRNA: 3'- -CGGUCGCGCuucgCGGGgGCUCGGCU- -5' |
|||||||
13000 | 5' | -63.2 | NC_003387.1 | + | 45063 | 0.74 | 0.085531 |
Target: 5'- cGCCgAGCGCGucGAGgGCCguCCUGGGCCGGu -3' miRNA: 3'- -CGG-UCGCGC--UUCgCGG--GGGCUCGGCU- -5' |
|||||||
13000 | 5' | -63.2 | NC_003387.1 | + | 31257 | 0.74 | 0.092789 |
Target: 5'- aCCGGCGCGGgcuGCGCCagCgGGGCCGGg -3' miRNA: 3'- cGGUCGCGCUu--CGCGGg-GgCUCGGCU- -5' |
|||||||
13000 | 5' | -63.2 | NC_003387.1 | + | 31018 | 0.74 | 0.092789 |
Target: 5'- gGUCGGCGCGGGccGCGCUCgCCGAGgCGGc -3' miRNA: 3'- -CGGUCGCGCUU--CGCGGG-GGCUCgGCU- -5' |
|||||||
13000 | 5' | -63.2 | NC_003387.1 | + | 30637 | 0.73 | 0.106197 |
Target: 5'- aGCacaAGCGCGAgAGCGCCUgaGAGCCa- -3' miRNA: 3'- -CGg--UCGCGCU-UCGCGGGggCUCGGcu -5' |
|||||||
13000 | 5' | -63.2 | NC_003387.1 | + | 3519 | 0.73 | 0.109089 |
Target: 5'- aCCGGCGCc-AGUGCCCCCGccGCCGc -3' miRNA: 3'- cGGUCGCGcuUCGCGGGGGCu-CGGCu -5' |
|||||||
13000 | 5' | -63.2 | NC_003387.1 | + | 34516 | 0.72 | 0.115096 |
Target: 5'- cGCCGGuCGUcgcgucgccGAGGCGCaCCUCGcAGCCGAu -3' miRNA: 3'- -CGGUC-GCG---------CUUCGCG-GGGGC-UCGGCU- -5' |
|||||||
13000 | 5' | -63.2 | NC_003387.1 | + | 50517 | 0.72 | 0.115096 |
Target: 5'- aCCGGCGagcaCGAGGCaCCCCUGAGCCc- -3' miRNA: 3'- cGGUCGC----GCUUCGcGGGGGCUCGGcu -5' |
|||||||
13000 | 5' | -63.2 | NC_003387.1 | + | 1763 | 0.72 | 0.124687 |
Target: 5'- cCCGGCgGCGgcGCugGCgCCCGAGCUGAa -3' miRNA: 3'- cGGUCG-CGCuuCG--CGgGGGCUCGGCU- -5' |
|||||||
13000 | 5' | -63.2 | NC_003387.1 | + | 30170 | 0.72 | 0.12602 |
Target: 5'- gGCCcGCGCGAucgccucgggcaaggAGCaGUCgCCGAGCCGGu -3' miRNA: 3'- -CGGuCGCGCU---------------UCG-CGGgGGCUCGGCU- -5' |
|||||||
13000 | 5' | -63.2 | NC_003387.1 | + | 35548 | 0.72 | 0.128045 |
Target: 5'- cGCCAGgagcacgacgcCGCGAuggacuaccucGGCGCCCuggCCGAGCUGGu -3' miRNA: 3'- -CGGUC-----------GCGCU-----------UCGCGGG---GGCUCGGCU- -5' |
|||||||
13000 | 5' | -63.2 | NC_003387.1 | + | 42431 | 0.71 | 0.142331 |
Target: 5'- gGCCuGCGCGcuGAGCGCCCgaGGuGUCGAa -3' miRNA: 3'- -CGGuCGCGC--UUCGCGGGggCU-CGGCU- -5' |
|||||||
13000 | 5' | -63.2 | NC_003387.1 | + | 47394 | 0.71 | 0.142331 |
Target: 5'- cGCaAGCGCGggGCaaccgGCCCCgcccCGAGcCCGAg -3' miRNA: 3'- -CGgUCGCGCuuCG-----CGGGG----GCUC-GGCU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home