miRNA display CGI


Results 1 - 20 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13000 5' -63.2 NC_003387.1 + 138 0.75 0.068731
Target:  5'- cGCCcuCGCGAuccGCGCCgCCGAGCUGGg -3'
miRNA:   3'- -CGGucGCGCUu--CGCGGgGGCUCGGCU- -5'
13000 5' -63.2 NC_003387.1 + 252 0.68 0.226056
Target:  5'- uGCuCAGCGUGcAGUGCCCuggcugcgCCGcGCCGGu -3'
miRNA:   3'- -CG-GUCGCGCuUCGCGGG--------GGCuCGGCU- -5'
13000 5' -63.2 NC_003387.1 + 478 0.66 0.322508
Target:  5'- aCCGGCGCGAGcugcucgucgcgauGCGCgCCCGcguGgCGAc -3'
miRNA:   3'- cGGUCGCGCUU--------------CGCGgGGGCu--CgGCU- -5'
13000 5' -63.2 NC_003387.1 + 982 0.68 0.226056
Target:  5'- uGCCGcCGcCGAGGCGCCgaCCgGGGUCGGa -3'
miRNA:   3'- -CGGUcGC-GCUUCGCGG--GGgCUCGGCU- -5'
13000 5' -63.2 NC_003387.1 + 1310 0.67 0.288666
Target:  5'- aGgCGGCGcCGcAGGCGCUCgCCGgucaccGGCCGAa -3'
miRNA:   3'- -CgGUCGC-GC-UUCGCGGG-GGC------UCGGCU- -5'
13000 5' -63.2 NC_003387.1 + 1405 0.68 0.220471
Target:  5'- cGCUcgaaguuGUGCGAGGCGCCgCCgccgaCGAGCUGGc -3'
miRNA:   3'- -CGGu------CGCGCUUCGCGG-GG-----GCUCGGCU- -5'
13000 5' -63.2 NC_003387.1 + 1763 0.72 0.124687
Target:  5'- cCCGGCgGCGgcGCugGCgCCCGAGCUGAa -3'
miRNA:   3'- cGGUCG-CGCuuCG--CGgGGGCUCGGCU- -5'
13000 5' -63.2 NC_003387.1 + 2158 0.67 0.288666
Target:  5'- gGCCuguugaGGUGUcaacacaAAGCGcCCCCCGAGCCa- -3'
miRNA:   3'- -CGG------UCGCGc------UUCGC-GGGGGCUCGGcu -5'
13000 5' -63.2 NC_003387.1 + 2459 0.66 0.317286
Target:  5'- cGCCAgGC-CGAGGUGCaccgCCCGGcGCUGAc -3'
miRNA:   3'- -CGGU-CGcGCUUCGCGg---GGGCU-CGGCU- -5'
13000 5' -63.2 NC_003387.1 + 3237 0.66 0.332377
Target:  5'- cGCCGG-GCG-GGCGCa-CCG-GCCGAa -3'
miRNA:   3'- -CGGUCgCGCuUCGCGggGGCuCGGCU- -5'
13000 5' -63.2 NC_003387.1 + 3519 0.73 0.109089
Target:  5'- aCCGGCGCc-AGUGCCCCCGccGCCGc -3'
miRNA:   3'- cGGUCGCGcuUCGCGGGGGCu-CGGCu -5'
13000 5' -63.2 NC_003387.1 + 3555 0.66 0.340118
Target:  5'- cGCCuGCGCGAc-CGCCUgCGcGCUGGu -3'
miRNA:   3'- -CGGuCGCGCUucGCGGGgGCuCGGCU- -5'
13000 5' -63.2 NC_003387.1 + 3591 0.66 0.324012
Target:  5'- cGgCGGCGCcuGAguuucagGGCGUCCuggCCGAGCUGAg -3'
miRNA:   3'- -CgGUCGCG--CU-------UCGCGGG---GGCUCGGCU- -5'
13000 5' -63.2 NC_003387.1 + 3771 0.67 0.268561
Target:  5'- cGCCAGCucaCGcAGCGCCUcgaagCUGAGCaCGAa -3'
miRNA:   3'- -CGGUCGc--GCuUCGCGGG-----GGCUCG-GCU- -5'
13000 5' -63.2 NC_003387.1 + 4641 0.66 0.340118
Target:  5'- cGgCAGCGCcacccgucGAGGCGCUUCgGGGCgCGGu -3'
miRNA:   3'- -CgGUCGCG--------CUUCGCGGGGgCUCG-GCU- -5'
13000 5' -63.2 NC_003387.1 + 5131 0.66 0.324766
Target:  5'- cGCCGcacGCGaCGAGGgGCgCUCGGcGCCGGu -3'
miRNA:   3'- -CGGU---CGC-GCUUCgCGgGGGCU-CGGCU- -5'
13000 5' -63.2 NC_003387.1 + 6132 0.7 0.162232
Target:  5'- uGCCGGUGCu-GGCGaCCcugCCCGAGgCCGAu -3'
miRNA:   3'- -CGGUCGCGcuUCGC-GG---GGGCUC-GGCU- -5'
13000 5' -63.2 NC_003387.1 + 7138 0.68 0.226056
Target:  5'- aGCCA-CGCGAGGCccgGCUCCUcGGCCGu -3'
miRNA:   3'- -CGGUcGCGCUUCG---CGGGGGcUCGGCu -5'
13000 5' -63.2 NC_003387.1 + 7838 0.69 0.209655
Target:  5'- cCCGGCGCGcAGGCggaaucgccgacGCCCCCGAcgGCUa- -3'
miRNA:   3'- cGGUCGCGC-UUCG------------CGGGGGCU--CGGcu -5'
13000 5' -63.2 NC_003387.1 + 8309 0.66 0.324766
Target:  5'- aCCGGCGCG--GCGCaucacuacggCCCG-GCCGAc -3'
miRNA:   3'- cGGUCGCGCuuCGCGg---------GGGCuCGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.